Gene detail

Detailed information of pspe_0.1.m1.42165.m1 in Pachyseris speciosa

Genomic Location: Sc0000434:262585...312471
NR annotation: KAJ7360368.1, hypothetical protein OS493_017000 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.42165.m1

atgaATGACTGGATTGTCGCTTTCTTGACCTTACTTGCTTATATGAAAAACGCCGACTGTGTCGCTCGTTCGAGTTTCGGGCCTCTACCGAAGGGAGAATCCTACAGTTTGGGCGGTTCAGGAAAAGAAGAGGATAAATGGAGTCTGAGAGGCCTTTCAGATATCGCCGATGGCATAGCGCTGGCACTGAGGGAAGATCCACCATACGATATAATTGGAAATGCACTGAGTCAATCATTTGGTACAGGTGGCAAGTCCCCAAGCATCTCTGAGGTCATTGACTATGAAGTTCCTTTGATAGTACTGGCAGGATTCTCTCTTCTGGCTGCAATTGTAATTCCCATTGTTGGGCTTATATTCTGCTGTTGTCGTTGTAAAGGGAACTGTGGTGGAAGTATTGATGATACTGAACTTAAGGTGCATCCCACCAAGGAAAGAATAGCGTACTCTGTTGGAATCCTCTTTTGTGCACTGTTTCTGGGcCTTGCAGGgtgtttcattttattttcaagCGTGAAAATGAGCGATAGTGTTCCTCATGCAAGAACTGTTTGGAAGGATTCATTTGGGATGGCCAGAGCTATAGTTGTTCCTGTATTTACTCAAGGAGCACCTGTGTTTGAAGAACTTTTCCATGCTGTTTTGGATTGCGAAGAAGCCATCTCTCAGTCTCTGATGCTGTTGAATGAGATACAATATACGGTGAAATCCCTGGTTTCAAAGGGCAATAATATCCAGCTTGAACTAGACACAGCGAGGAAAAATCTAACTGCTGCAAAGATTGATTGTCTGCGTGTTGCACCTGGGCAAGCTGAATGCAACAACATTCCTATGGGAAATAAGCTGTCAACTGAGGCAAACTTTACCAAGGTTCCTAATGTCAATGATACACACAAGAAAGTTAAAGATGTTGCGAAGACAAACCTAACACATGAAGTTAAAAAGgGTAATGAGTCAGTTCATGACATTCCTGAGAAAGTAGAAAACTTGACAACTAACTTGAGAAAAgACTTTAAGAACTTTTCATCTGAAATAGAAAACACGACAGCTGATGTTTTAACGCCATTGGAAAACGACATCAGTCAGTACATACAGGATTCACTGTACCCAGTTAGAGATGATGTGGATGAAAAGTACCTTGGGCCTGATGGAATGATGACTAAATATGACAGTTACAGGCATGTGATCTTCACCTTACTAGCAACACTGATTTTTCTGAATGCGTTTTTATTGGCAATAGCCGTGATACTGGGTTTGGTTGGTTCAGCGAGGTATGACACCCCCAACAGCAGAAGCAAACTCGCAGACTGGGGAGGGAGACTTATGATTGGAGCGGTTGGTCTGTTTTTCTTCTCTGCCTTTCTTGTCAATCTAATGACTGGAATTTTATTCCTCGTGGGAGCAAACATTGCAATTGTTTGCGATGATCTGCCTGATTACAAGCTGCTTAAGAAGACTATAGATGATCCAAAGCTTATGGGAGAGTACATACTGGCGCGAGAGTTACTCAGTGATGGCAGTGTGCCTCTGACTGCTTCTGGAGTCCTCAGtgATTGTTCCAAAAATTATGCCCCTTGGGATATTTTGAAGATGGATCATTTGTATAATCTCTCTGATGCTCTGTACTATAAAGATAGAATCCCTACCATAAATGAAGTGTTTAAAAAGCTAAACGAGACTATTAAGGATACAACTGTTCTGTCTGGTGACGCGACGGAAAGTGTGAATGATTCACTTGATGCTGGAGTGCATGAAATTAACTTTACACAATATCATGAACAGGTTAACAAACCCATAGTAAGTGTTCCGCTGGCCCCATTTGCGACAAACGTCAGTAAAGCTGCCGACAAGTTGAAACCCTTCAGCGCGAAAGTAAGCAATCAACTGAACGCCACTGCAGACAGACTTGAACATGTGCACAATACAGCTGTGAGTGGAGCCAAACAACAGGCGAATAAACTTGGTCAGCTTGTGAATCAGCTTCAGGAGCAGGGAAATGCTATAAAGaattctTACGTTAGAGTGATGAAAAGTTTGAAAGATGCAGAGTCTTTCTTGAGCGACGATGCTCCTGCCATTGCTGCGAAGGCTGCTGTGGACAATTGGGACAAAGTTTTTGGTGATGTGGATTTCTTTATTAGTATGGTCATTCGTCAGGTACGGTTTGAAGTTGGGCGCTGTAAACCTTTGTCCAACATTTATCACGGGCTCACAAGTTCCCTGTGCTACCATTATGCTGCGGGAATGAATGCCTCTTGGATAGCATTGGGTCTGTCTGCGCTCATTCTTCTCATATCCATCATCCTTTGCGTGCGGGCCTCAAAGCATTTCCGGCGGGCTTCAGGCAGGGAAGGACTTGATGACTCAGaTAAACCGTTAATAAGCGTCCGACctcaacaaaacaaatttaaaggacaCACAAAGCCTCCAACAAAG

Transcript

pspe_0.1.m1.42165.m1

agtttgttttcttcggAGATCCGAGATCTCGCTGACATCTGCCGTGTATTAGTATATTCTGGTATATTTTCCCgcaatttcattggctaatCAATAGTAATCTGAATATATGCTTCCTCTGCTTATAAAGAGACGCCTATTTCTTTTCTCCGTTTTGCGCTTTTCCACGGGCAACAAGAAGCCAGCTGCTATCGACGAAAGCAAATGTACAGGTAGTATTCTTCGTAGAACGAATTTGATCGATCTCCGTAATTTTTTTTGCCGCGATTTCAACGAGCTGCTGCCCTTAGGCATGATTTTATAATTCATGAAGTTGGacttacttgacttgaaatgaATGACTGGATTGTCGCTTTCTTGACCTTACTTGCTTATATGAAAAACGCCGACTGTGTCGCTCGTTCGAGTTTCGGGCCTCTACCGAAGGGAGAATCCTACAGTTTGGGCGGTTCAGGAAAAGAAGAGGATAAATGGAGTCTGAGAGGCCTTTCAGATATCGCCGATGGCATAGCGCTGGCACTGAGGGAAGATCCACCATACGATATAATTGGAAATGCACTGAGTCAATCATTTGGTACAGGTGGCAAGTCCCCAAGCATCTCTGAGGTCATTGACTATGAAGTTCCTTTGATAGTACTGGCAGGATTCTCTCTTCTGGCTGCAATTGTAATTCCCATTGTTGGGCTTATATTCTGCTGTTGTCGTTGTAAAGGGAACTGTGGTGGAAGTATTGATGATACTGAACTTAAGGTGCATCCCACCAAGGAAAGAATAGCGTACTCTGTTGGAATCCTCTTTTGTGCACTGTTTCTGGGcCTTGCAGGgtgtttcattttattttcaagCGTGAAAATGAGCGATAGTGTTCCTCATGCAAGAACTGTTTGGAAGGATTCATTTGGGATGGCCAGAGCTATAGTTGTTCCTGTATTTACTCAAGGAGCACCTGTGTTTGAAGAACTTTTCCATGCTGTTTTGGATTGCGAAGAAGCCATCTCTCAGTCTCTGATGCTGTTGAATGAGATACAATATACGGTGAAATCCCTGGTTTCAAAGGGCAATAATATCCAGCTTGAACTAGACACAGCGAGGAAAAATCTAACTGCTGCAAAGATTGATTGTCTGCGTGTTGCACCTGGGCAAGCTGAATGCAACAACATTCCTATGGGAAATAAGCTGTCAACTGAGGCAAACTTTACCAAGGTTCCTAATGTCAATGATACACACAAGAAAGTTAAAGATGTTGCGAAGACAAACCTAACACATGAAGTTAAAAAGgGTAATGAGTCAGTTCATGACATTCCTGAGAAAGTAGAAAACTTGACAACTAACTTGAGAAAAgACTTTAAGAACTTTTCATCTGAAATAGAAAACACGACAGCTGATGTTTTAACGCCATTGGAAAACGACATCAGTCAGTACATACAGGATTCACTGTACCCAGTTAGAGATGATGTGGATGAAAAGTACCTTGGGCCTGATGGAATGATGACTAAATATGACAGTTACAGGCATGTGATCTTCACCTTACTAGCAACACTGATTTTTCTGAATGCGTTTTTATTGGCAATAGCCGTGATACTGGGTTTGGTTGGTTCAGCGAGGTATGACACCCCCAACAGCAGAAGCAAACTCGCAGACTGGGGAGGGAGACTTATGATTGGAGCGGTTGGTCTGTTTTTCTTCTCTGCCTTTCTTGTCAATCTAATGACTGGAATTTTATTCCTCGTGGGAGCAAACATTGCAATTGTTTGCGATGATCTGCCTGATTACAAGCTGCTTAAGAAGACTATAGATGATCCAAAGCTTATGGGAGAGTACATACTGGCGCGAGAGTTACTCAGTGATGGCAGTGTGCCTCTGACTGCTTCTGGAGTCCTCAGtgATTGTTCCAAAAATTATGCCCCTTGGGATATTTTGAAGATGGATCATTTGTATAATCTCTCTGATGCTCTGTACTATAAAGATAGAATCCCTACCATAAATGAAGTGTTTAAAAAGCTAAACGAGACTATTAAGGATACAACTGTTCTGTCTGGTGACGCGACGGAAAGTGTGAATGATTCACTTGATGCTGGAGTGCATGAAATTAACTTTACACAATATCATGAACAGGTTAACAAACCCATAGTAAGTGTTCCGCTGGCCCCATTTGCGACAAACGTCAGTAAAGCTGCCGACAAGTTGAAACCCTTCAGCGCGAAAGTAAGCAATCAACTGAACGCCACTGCAGACAGACTTGAACATGTGCACAATACAGCTGTGAGTGGAGCCAAACAACAGGCGAATAAACTTGGTCAGCTTGTGAATCAGCTTCAGGAGCAGGGAAATGCTATAAAGaattctTACGTTAGAGTGATGAAAAGTTTGAAAGATGCAGAGTCTTTCTTGAGCGACGATGCTCCTGCCATTGCTGCGAAGGCTGCTGTGGACAATTGGGACAAAGTTTTTGGTGATGTGGATTTCTTTATTAGTATGGTCATTCGTCAGGTACGGTTTGAAGTTGGGCGCTGTAAACCTTTGTCCAACATTTATCACGGGCTCACAAGTTCCCTGTGCTACCATTATGCTGCGGGAATGAATGCCTCTTGGATAGCATTGGGTCTGTCTGCGCTCATTCTTCTCATATCCATCATCCTTTGCGTGCGGGCCTCAAAGCATTTCCGGCGGGCTTCAGGCAGGGAAGGACTTGATGACTCAGaTAAACCGTTAATAAGCGTCCGACctcaacaaaacaaatttaaaggacaCACAAAGCCTCCAACAAAG

Protein

Uniprot

Uniprot term	Description
Q9W735	Prominin-1-A OS=Danio rerio OX=7955 GN=prom1a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05478	Prominin	Prominin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008795	Family	Prominin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22730	PROMININ PROM PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06532	PROM1, CD133; prominin 1	-	CD molecules	ko04090	deepkoala