Gene detail

Detailed information of pspe_0.1.m1.42858.m1 in Pachyseris speciosa

Genomic Location: Sc0000450:492059...501360
NR annotation: RMX60809.1, hypothetical protein pdam_00007788 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.42858.m1

GGTTGTCTTTGATTATTTGTTCTTCTTCATCAATAACATCACTGCacctttaaccctttaacagaAAAATCCTGAAAGGTTCAGTTGATTTTGTGCATGTGTTGTTAATCTGTAGAGggtatagagggtatgcaaccagtctccagagattcgaatgacaacggctggcggccatgttggtggacaataacaaaagaagctaatgtgaaatcttttgttcatggTACAACAACATGGTGGTGATGACGTAATGTGctgcggccatgttggaggtcaataACAATGGTCTTTCTCTCTGCTGGGAAGTAAATTCTTTTTTAggtaaattgtttgaaaaattttttattgttttgacccccaacatggccgccctcaGTCACATggttgaaaaccaagaatagtttTTATCCACATTTTCAATTCCAATTTCTCCTTTCTCTTCCATCCATCTTTAATCATGGCCTTTGCCTATTTGCTGTCTTTCTTCACGGTCTCTTTAACGACAAGAATTCCCTCACTTTTCACCGTAGCCATCAGCGTAAAATTCCTTAAAATACACATAATCCCCTTTGAACGCCGGAGTCTTGTCCCCTGCGATTGGAATCTTGGCTGCTGTTTGCAGCATCTCGGTTATAGTTTCTGCAACACTTTCATCATTCTCAAGATCCCCGGAAGAGGCAAGAACTGCTCCATTGGAATTTATTTCCAATCATCAGGGATTTTGTACATCAGGGATTTTGTCTAAACCCAGCTGAGCTCGGCTGCCATTTTGCAATGATATCGAGAGAGATCTGGGACCAGGGAGTCTTCTGTCCCATGAAGCTTTTCCAGATGTGACAAGAGGCGCGGTGACCAAGCTGCTTTCCTCTTCGCACGTTCGAGAAAACgtgaaactttgaaaactacagCATGTCTCGCAAAAGAAAGGTTGTAGCAGATGAAGAGGACGATCCGACCAAGATCGATTTCGAAACATCCGAAGAAGTTGACGTTGTGCCAACTTTTGATCAGATGAGACTTCGAGAAGACTTGCTGCGAGGCGTTTATGCTTACGGTTTTGAGAAACCGTCAGCCATTCAACAGCGTGCTATAAAGCCGATTGTAAAAGGAAGGGACGTCATCGCGCAGGCCCAGTCTGGAACAGGAAAAACAGCTACACTCTCCATTTCTGTGCTACAGTCAATAGATATTCAGACCAGAGAAACACAGGCTCTAATCATGTCTCCGACACGTGAACTGGCACAACAAATTCAAAAGGTTATCCTTGCCCTTGGTGATTACATGAGCATTCAGTGTCATGCATGCATTGGAGGTACAAATATTGGGGAGGACATCAGAAAACTTGATTATGGGCAACACGTTGTGTCTGGAACACCTGGCAGAGTTTTTGACATGATCAGAAGACGTAGCTTGAGGACTCGAGCAATTAAATTGCTGGTGTTGGATGAGGCAGATGAAATGTTGAAcaaaggCTTTAAGGAACAGATCTACGATGTGGACTGGTTGGTAGAGAAAATGAGAGAAGCAAACTTCACCGTATCTGCCATGCATGGTGACATGCCACAGAAGGAACGAGATGCCATCATGAAAGAATTCAGATCTGGGCAGAGCCGTGTGCTGATTTCCACAGATGTGTGGGCCAGAGGTATTGACGTGCAACAAGTGTCTCTGGTGATCAACTATGACCTGCCCAACAACCGTGAATTGTACATTCACAGGATTGGCCGATCAGGCCGTTTTGGTCGCAAAGGTGTTGCCATCAACTTTGTGAAATCAGATGACATCAGAATCTTGCGCGATATTGAACAGTATTACAGTACGCAGATCGATGAAATGCCCATGAATGtggGTGATCTCATCTAAAGTTCATTGTGACTGGCTGCGGAGGAACCACACTATGACAGAATGGCCATTGTATTTATTGCTGTGAGGTCCTGAAAATTTAGCATTCCAGGTTATCGTTACTATAGTTTGACAAAGGAGAGATTACCATTTGATAGTCCCCAGAATTGTATAGTCTTCTGTTCAATGTATGAGTTTGTTAATGATATTGTTTTACTTTTACCCAAAATACATTGATTTACATAACACGCTGACTTGTAAACACCAATTTTAATGTAGGAATGTTTTAAAATCCTCTACAACAGTTCATGCTTTGTGTGTTACATATGATGTACATGTAATGAAATTGTTCACTTGTCTTTTTACAAATCTTAATGCCTGGCCAACAATGTACTTAATTCTTGCTGTTTTATGAATAAAGTTGTCCAAGTTATGACTGGTAGTTCAATGATTACAGTCAATCTGCATTGTCAAGATAGGAccattttcttttcacaaaTCAAATACATTAGAAACTAATGACAAAAAGCAGTTTTGCATTCAGGAATTATAtacatctgttttttttttcttcaagttaTGG

Protein

Uniprot

Uniprot term	Description
Q7ZVA6	Eukaryotic initiation factor 4A-III OS=Danio rerio OX=7955 GN=eif4a3 PE=2 SV=1
B7ZTW1	Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis OX=8364 GN=eif4a3 PE=2 SV=1
B5FZY7	Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata OX=59729 GN=EIF4A3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13025	EIF4A3, FAL1; ATP-dependent RNA helicase	EC:5.6.2.7	Translation factors	ko03012	deepkoala