Detailed information of pspe_0.1.m1.43919.m1 in Pachyseris speciosa

Genomic Location: Sc0000475:30621...46824
NR annotation: XP_015754695.1, PREDICTED: aryl hydrocarbon receptor nuclear translocator-like [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P79832Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus mykiss OX=8022 GN=arnt PE=1 SV=1
O15945Aryl hydrocarbon receptor nuclear translocator homolog OS=Drosophila melanogaster OX=7227 GN=tgo PE=1 SV=3
Q9BE97Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus OX=9913 GN=ARNT PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF00989PASPAS foldDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000014DomainPAS domainInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR050933FamilyCircadian Clock Transcription FactorsInterproscan
IPR013767DomainPAS foldInterproscan
IPR001067FamilyNuclear translocatorInterproscan
IPR035965Homologous_superfamilyPAS domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23042CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PASInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0034751Cellular Componentaryl hydrocarbon receptor complexInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan

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