Detailed information of pspe_0.1.m1.44136.m1 in Pachyseris speciosa

Genomic Location: Sc0000479:587847...657582
NR annotation: KAJ7369746.1, Protein zgrf1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q0VGT45'-3' DNA helicase ZGRF1 OS=Mus musculus OX=10090 GN=Zgrf1 PE=1 SV=2
Q86YA35'-3' DNA helicase ZGRF1 OS=Homo sapiens OX=9606 GN=ZGRF1 PE=1 SV=3
Q9HEH1Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=2E4.130 PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyDUB|ULP|ULP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13086AAA_11AAA domainDomainInterproscan
PF02902Peptidase_C48Ulp1 protease family, C-terminal catalytic domainDomainInterproscan
PF13087AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041677DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR047187DomainUpf1-like, C-terminal helicase domainInterproscan
IPR003653DomainUlp1 protease family, C-terminal catalytic domainInterproscan
IPR045055FamilyDNA2/NAM7-like helicaseInterproscan
IPR041679DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10887DNA2/NAM7 HELICASE FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008234Molecular Functioncysteine-type peptidase activityInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan

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