Detailed information of pspe_0.1.m1.44944.m1 in Pachyseris speciosa

Genomic Location: Sc0000498:466824...488041
NR annotation: CAH3141791.1, unnamed protein product [Porites lobata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7RKF6RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1
Q6NZS4RNA-splicing ligase RtcB homolog OS=Danio rerio OX=7955 GN=rtcb PE=2 SV=1
Q9Y3I0RNA-splicing ligase RtcB homolog OS=Homo sapiens OX=9606 GN=RTCB PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01139RtcBtRNA-splicing ligase RtcBFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001233FamilyRNA-splicing ligase, RtcBInterproscan
IPR027513FamilyRNA-splicing ligase RtcB homologue, eukaryoticInterproscan
IPR036025Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11118UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006396Biological ProcessRNA processingInterproscan
GO:0008452Molecular FunctionRNA ligase activityInterproscan
GO:0003972Molecular FunctionRNA ligase (ATP) activityInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0072669Cellular ComponenttRNA-splicing ligase complexInterproscan
GO:0000971Biological Processobsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphateInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14415RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)EC:6.5.1.8
Transfer RNA biogenesisko03016deepkoala

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