Gene detail

Detailed information of pspe_0.1.m1.44953.m1 in Pachyseris speciosa

Genomic Location: Sc0000498:564170...565411
NR annotation: KAJ7381933.1, hypothetical protein OS493_038237 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A7RKF6	RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1
Q6NZS4	RNA-splicing ligase RtcB homolog OS=Danio rerio OX=7955 GN=rtcb PE=2 SV=1
Q561P3	RNA-splicing ligase RtcB homolog OS=Xenopus tropicalis OX=8364 GN=rtcb PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036025	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR001233	Family	RNA-splicing ligase, RtcB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008452	Molecular Function	RNA ligase activity	Interproscan
GO:0000971	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972	Molecular Function	RNA ligase (ATP) activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0072669	Cellular Component	tRNA-splicing ligase complex	Interproscan