Gene detail

Detailed information of pspe_0.1.m1.45979.m1 in Pachyseris speciosa

Genomic Location: Sc0000524:161877...171235
NR annotation: KAJ7324075.1, Rad2 nuclease [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8L6Z7	Exonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=EXO1 PE=2 SV=2
Q803U7	Exonuclease 1 OS=Danio rerio OX=7955 GN=exo1 PE=2 SV=1
Q9W6K2	Exonuclease 1 OS=Xenopus laevis OX=8355 GN=exo1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08797	HIRAN	HIRAN domain	Domain	Interproscan
PF00867	XPG_I	XPG I-region	Family	Interproscan
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014905	Domain	HIRAN domain	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR006086	Domain	XPG-I domain	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR019974	Conserved_site	XPG conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan