Gene detail

Detailed information of pspe_0.1.m1.46170.m1 in Pachyseris speciosa

Genomic Location: Sc0000528:430075...451282
NR annotation: CAH3162377.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.46170.m1

ATGACAAAATTCCCAATGTTTGCCAGTGCACTGATTGAAGAAACAGTGAAAACACTGCGGCTATTCATGCTTCACGGCAATCTTTACGGTTACCCAGCTTCATTTGTGTGCAAAGCAACTGGTAGACCTCCACCAAAGTACCAATGGCTAGGCCCAAATGAACAAGCAATTAGTTCACTTGTAACATTTCACATCAAAGATGGTAACTTAACAGTCATAAAAGCAGAGAGAGGTTTGATTGGAAAATACACCTGTAGAGCATACAATGAGATTGAAAAAACTGGGAAGAAGGTCGGTGAAGCTACAGCCCAGGTGGAAATTAAGGATGTTTATGtgccaCCTAAGATCATCTCTTCAAATAACGATGTCCTACGGAAAAGAGGGGACGATTTTGACTTAGAATGTGAGGCTGAGGGAGTTCCTTCTCCAACTGTAGAGTGGAAAAAGAATGGAGAGAGGGACCCTCGTCAAAAGATTTCAAGCAACAGAAGTGTCATTGAATTTAGAAATATTCAAGTTAAGGATGGTGGAAGGTACAGCTGTGAGGCAAGAAACAGTGCTGCTGACAGCAATGGGAATGCTATTGTAGCGACCATAGTTCGAAATGTCAACATCAAATCTAAACCATACGTTATCGAACAAGCTCCAGACAAAGTGTACTCATTCATTGGAAACAGCGATCCAACCTTTGTGACATGCACATTTGGTGGTTATCCAGAACCTTGGGTGGTTATGAAATATGACAAGAAGTTGGTATCCAATGCAACTACAACAGCCAATTTTAGCATTATCACGGATGCCAAGGATAACTTTGGGACTTACCATTGCCGTGCCCAAAATGAATATGGCCATCAGAATCAGACTATTGAACTCAAAGAAGTTGAAAAACCAAGCGAAGTTCGTAACTTCAAAGCCGATCGTTCCACATGTGACAGTGTTACACTTACTTGGGCTTCTCCTTTGAAAGATGGAGGAATGCCCATCAACAAGTTTGTCCTTGAATATGACGACAACACACGAAACATTGAGTCCTGGAAGAGATCACACACCATTCTTTACCTCAAGCGAGATGAAGACTACACGTTTGCCATTCGAGCTACAAATAAGGGTGCGTGGGGCGATAAAACGAACACAAAAGTCAAGACCAAAAAATACTGTGTGCCTGGTCGTCCCATTATATACGAGCCTAGTTCCTCCGCACTTGATGAAACCAGTTTTACTCTAAAATGGCGCCGTCCAGAAAACACGGGAGGCGATGACGAGATTGAGTATATAATCCGCTACCGTGACGTGAGCGAAGACAAAGAAATGCCCTGGAAGAAATTCACAACAAAAGAAACTGAATATGATATCGAAGATCTTGATCGGCAGAAGAGATACAAGTTTGAGGTGACTGCGAAAAACAAAGGAGGGGAAAGCAGCCCTGATGAGAGATACTTCGTTATCAGCAAAGTCGGAGCTCGTAGTTTCCAGCTGCAGCTGGTCGCCAGTTTCATGGTAATCTTTACTGCGGGCATTCTGCATCTGCTTTGACCCGCAGCGCGCTGACAACAGGAACTTCAGAGTGAGAAGCTTTCAAGCAGAACACAGGGATTATCCTTATTGATACAGATGAAGTGTTTAGTAGTGATTTATACAATACTCGTACAGTGTGATAATAGAGCGCTTTCGAACGTGCTTGAAATCGGTAATTAGCTGTTGTCCCCAGAAGCGCCCAACCCATCCGCTTGTGGTGTCCATTCTGACAGAGCCAGCGCTGTTTTACAAGTTCTATTTAAAACAGTATGTTTGTTCCTCGAAATTGTATAACAGTGGAATGAAAAAGTATATAACTTAGATGGCTTTAGTAGTGTGAGGTCATTGTTCCCAGATCTGGCAGCCATTTTTGTGTGCTGTGGCTTTGAAGCCAGGGTTTTTAGGATTCTGTAACTCAAAGAAATGTACAGCCCCCGAAATGATCCCGACCCCGAAATGATCCCCAACCCTGAAATGATCCCCAAATCGACCCCGAAATGATCCCGACCCTGAAATGATCCCCGTTTTTCTTCTTGTTCACCCCGAAATGATCCCCAAGGAATTAAGGAATGGCGATTAAACAAGGGACTGTGGATTGCTTCCTTGCCTGTCGAGTGCATGAAGAACCAGTACATACGGtgaagaaaatttccaaagtgCAGTAAGA

Protein

Uniprot

Uniprot term	Description
Q9VS29	Cell adhesion molecule Dscam2 OS=Drosophila melanogaster OX=7227 GN=Dscam2 PE=2 SV=3
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala