Gene detail

Detailed information of pspe_0.1.m1.46186.m1 in Pachyseris speciosa

Genomic Location: Sc0000529:24981...39607
NR annotation: CAH3130655.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.46186.m1

ATGGCGTCCAAGGGTTTTCTTGTTGGAGATCACACAATTCGTCCACGGCGCCCAGTTAGATATGTAGCGACTAAACAAGCCTCTAAGACAAccagaagaaagaagaagaagcctGAATGGGATAGCACTGTAAATGACCTGAATGTACACAAGGCGACTAAAGAAGAACAGgtCAGAAGGCATGAACTTCACAAATCCAAAAATGCCACTAAAGTTCTGTTACAAAGGCAGTTAAAAGACCAGAGTCTTGACTCCACTCTTCAGACTCCAGATACTGTTGAAAGACGGAAATTAGCCATTGTTCAAGAAGTTTTGTATGGTCATGATAAGCTCCAGGATGTCCTGTCCAAGTCAGACAAAGCTATGTCAGTTGTAAGAGATTTATTTGGTGATGATCCAAAGAAGTTCATGGGATTTCCAAACATCACTGCTGCCCCAAGTTTGCATGGAAAAGAAAATAAATTTGTTGTTGGCCCAGTAGCGGAACCTCCTGAAACTCCAACTCATCTGTCACTGTTGAGTGATTCTATTATGAGGACACCAGCATTGAATGAGCTATCAGATGATAGCAAAGAAGAGAAAGCACTGTCTCCAGAATCACCAGCCGAACAGGATTTAACAAAGCACCCAAGTTCTTCCTTCCAACCAATGCTGGATcttcaaagatttcaacagttTGTGGCCCAGGAAAATAGCAGAGATATAGAGAACCCACAATTTCTCTTAAATGGAGGTGGCACTGGTCATGTTGCACCTTTATATGGGCATGGCACTAATCATGTGGCTCCACATGGGCATACAACTGACCATGTGGCATTACATGGGCGTGGTATCAACCATGTGGCACCACATGGAAACCTACATGCAGGACCTGACAAGCCAAgtgatgaccctgacatttaTTCACAGGCATCCCAGCCTTATGTTCATCCACAAGCTGTTATTCCTTCCACAACTGGTGCACAAATCATCACTAATGGGTATGTATCTGCCTCTAGTGGGCACAACCCTCAGCGTGTGGCTCAACATGGCAGTCTGACTTCAGAAGCCGATCAGATTAGTGAACCATCATCTTTCCTAAGCCAGAAATCAGCAGAAATTGTTGCAGGAGGTCCCAACTTTGCAATACCAGTGACCACTGGAGAAACAACTGCAGGCAGCATGATTCCACCCAATATCAGACCATCATCAAGAAATGCAGAAGATCAACAGGGATCacacaaaataaagaaaaggaCAAAGACCAATGAGAAACCAACACTGAATTCTTCCTCCAGTGGATTACGAACGTACGAATCAGAAACAGGACGACAACAGACTGGAGTATCCACTGTGCCTGGCAGTTTCAGTGGATACACAGCATCACTTATCACTGCAGTCACCAAGCTGATGGGTTACTTGAAGGAGAGTGAGATTCAACGAAAAGCAGAGATGGTTCTGAGAGAGCAAGTACTCCAAGGATTTCAAGAACAGAGAGTTTTGGTTGATGCCTTGACTAATGGGGATGAAAATCATAACTTCGAGTACCTCCCTGGAGCCACAAGTTCTCAAACTCATCAAGGAACAGAACAGCAAAGGACTATAAATGGCCAAAGAGGTGCTTACACAACAGCACCATCTTTCATACCACTTGCAACATCGCAAGGTCAAGATATTCCTCAGTTCCCTCACATGCAAAGTACAGTGGCAGTATCACATACACAGGTTCCCCAAGGACATAACCAGCCATTGTACACTGCTGTACCACTTCCTTCTTCCAATGGAATTGGTCCAGCATTGCAACAGGGTACCCAAGCATCTAATAAACCAGTGGGCCAGAGGCACCCCTTGCAGCAAGATAAGCTTGTTGTTTCTACTGAGAACTTCACTGGCATCCAACATTTTCCAGCACCTATGGCAGTGTCTTATCATCAAGGGCACCATACTGGATCAGATATTTTGGCATATCATGATCCTGAAACAGCTAAAATTGCTGTGGGTGGCCAAGGTCAGACAGGATCCAACATTCTCATGTATCCACCCACTCAGGGTCCTTTCATGCATGCAGAAAACAAAGGAATGGCCCAGATGCCCACAGCTGGTCTCCCTGGTAGTATTAACCACAGTATTCCTCCAGTATATACCCAAACAGCCCATAGCAGCATGGTGGCATACTCCAGATCTGCGCCATCCACAGCTCCCCATGCAAGAAATGAAAGAGCACATGTAGTACAGCCAGCACCATCCCCAGTTCCTCTGATAGGAGACCAACCAGCAAAACAGGCCAGTCAACTGTTACTTGGTAGTGCAGTGGGCCccaaaacaaaatctacaactCCTCTGATAAGAAATGAACCACCTTCACTTAGTATTACAGTGGGGCAACCTTCAATGTCCACAACTTCATCTTTGCGCAGCCTGCAGCTCGATCTGCCAGGTCAAACTGTCAGTAATGGGCAACCAGAACAGCCAGTCTTGAAGAACACAGGGCCACCAAATGTTACGTTACAAGGGGTGTCACAGACAGTGCCATCTTCAAACCCTAGTGCTGCAAGGCAAGCTGGTGTAACAGTTGTAACACAAAAGACAACTAATGTGCTTACACAACATCAACAGCCTCTACAGGAAGTTCTTGCCCAAACATCTGTAAAATCAGAGCACACTTCAAAACCCAGATTTTTTGCTCCAGTTTCAAAAGCAATGACCAGTGGTCTTCCAGCCAATCATGAACTGAGGGAGCGGCTTCAGAGCCTGGCTAACAGGCAGAAGGGTTTGGCAGCTCGAACTGTTGATCAGAATGGTGGTAGTGTGCCAGCACTTCCCCAGAATAAAGGAGACACCAGAGGAGTACAACACCCACGTCCAACATCTCCTCACGTACACTTCAAGGAGCCACCTGCAGCTGGTAAAGAAGAAGGGAAGCAGTCCCCTCCAGTCTCACCCATCCCATACAAGAATACTGCAGTCGCTAGGTCAAGTGCCCATCCTGATAAAAGTGTTGTGGTGAATCTGCCAAATGCCTGGTCAGATGTCTCGTCAACAATTTCATTGTAA

Transcript

pspe_0.1.m1.46186.m1

TAGAAAATAAACATGGCGTCCAAGGGTTTTCTTGTTGGAGATCACACAATTCGTCCACGGCGCCCAGTTAGATATGTAGCGACTAAACAAGCCTCTAAGACAAccagaagaaagaagaagaagcctGAATGGGATAGCACTGTAAATGACCTGAATGTACACAAGGCGACTAAAGAAGAACAGgtCAGAAGGCATGAACTTCACAAATCCAAAAATGCCACTAAAGTTCTGTTACAAAGGCAGTTAAAAGACCAGAGTCTTGACTCCACTCTTCAGACTCCAGATACTGTTGAAAGACGGAAATTAGCCATTGTTCAAGAAGTTTTGTATGGTCATGATAAGCTCCAGGATGTCCTGTCCAAGTCAGACAAAGCTATGTCAGTTGTAAGAGATTTATTTGGTGATGATCCAAAGAAGTTCATGGGATTTCCAAACATCACTGCTGCCCCAAGTTTGCATGGAAAAGAAAATAAATTTGTTGTTGGCCCAGTAGCGGAACCTCCTGAAACTCCAACTCATCTGTCACTGTTGAGTGATTCTATTATGAGGACACCAGCATTGAATGAGCTATCAGATGATAGCAAAGAAGAGAAAGCACTGTCTCCAGAATCACCAGCCGAACAGGATTTAACAAAGCACCCAAGTTCTTCCTTCCAACCAATGCTGGATcttcaaagatttcaacagttTGTGGCCCAGGAAAATAGCAGAGATATAGAGAACCCACAATTTCTCTTAAATGGAGGTGGCACTGGTCATGTTGCACCTTTATATGGGCATGGCACTAATCATGTGGCTCCACATGGGCATACAACTGACCATGTGGCATTACATGGGCGTGGTATCAACCATGTGGCACCACATGGAAACCTACATGCAGGACCTGACAAGCCAAgtgatgaccctgacatttaTTCACAGGCATCCCAGCCTTATGTTCATCCACAAGCTGTTATTCCTTCCACAACTGGTGCACAAATCATCACTAATGGGTATGTATCTGCCTCTAGTGGGCACAACCCTCAGCGTGTGGCTCAACATGGCAGTCTGACTTCAGAAGCCGATCAGATTAGTGAACCATCATCTTTCCTAAGCCAGAAATCAGCAGAAATTGTTGCAGGAGGTCCCAACTTTGCAATACCAGTGACCACTGGAGAAACAACTGCAGGCAGCATGATTCCACCCAATATCAGACCATCATCAAGAAATGCAGAAGATCAACAGGGATCacacaaaataaagaaaaggaCAAAGACCAATGAGAAACCAACACTGAATTCTTCCTCCAGTGGATTACGAACGTACGAATCAGAAACAGGACGACAACAGACTGGAGTATCCACTGTGCCTGGCAGTTTCAGTGGATACACAGCATCACTTATCACTGCAGTCACCAAGCTGATGGGTTACTTGAAGGAGAGTGAGATTCAACGAAAAGCAGAGATGGTTCTGAGAGAGCAAGTACTCCAAGGATTTCAAGAACAGAGAGTTTTGGTTGATGCCTTGACTAATGGGGATGAAAATCATAACTTCGAGTACCTCCCTGGAGCCACAAGTTCTCAAACTCATCAAGGAACAGAACAGCAAAGGACTATAAATGGCCAAAGAGGTGCTTACACAACAGCACCATCTTTCATACCACTTGCAACATCGCAAGGTCAAGATATTCCTCAGTTCCCTCACATGCAAAGTACAGTGGCAGTATCACATACACAGGTTCCCCAAGGACATAACCAGCCATTGTACACTGCTGTACCACTTCCTTCTTCCAATGGAATTGGTCCAGCATTGCAACAGGGTACCCAAGCATCTAATAAACCAGTGGGCCAGAGGCACCCCTTGCAGCAAGATAAGCTTGTTGTTTCTACTGAGAACTTCACTGGCATCCAACATTTTCCAGCACCTATGGCAGTGTCTTATCATCAAGGGCACCATACTGGATCAGATATTTTGGCATATCATGATCCTGAAACAGCTAAAATTGCTGTGGGTGGCCAAGGTCAGACAGGATCCAACATTCTCATGTATCCACCCACTCAGGGTCCTTTCATGCATGCAGAAAACAAAGGAATGGCCCAGATGCCCACAGCTGGTCTCCCTGGTAGTATTAACCACAGTATTCCTCCAGTATATACCCAAACAGCCCATAGCAGCATGGTGGCATACTCCAGATCTGCGCCATCCACAGCTCCCCATGCAAGAAATGAAAGAGCACATGTAGTACAGCCAGCACCATCCCCAGTTCCTCTGATAGGAGACCAACCAGCAAAACAGGCCAGTCAACTGTTACTTGGTAGTGCAGTGGGCCccaaaacaaaatctacaactCCTCTGATAAGAAATGAACCACCTTCACTTAGTATTACAGTGGGGCAACCTTCAATGTCCACAACTTCATCTTTGCGCAGCCTGCAGCTCGATCTGCCAGGTCAAACTGTCAGTAATGGGCAACCAGAACAGCCAGTCTTGAAGAACACAGGGCCACCAAATGTTACGTTACAAGGGGTGTCACAGACAGTGCCATCTTCAAACCCTAGTGCTGCAAGGCAAGCTGGTGTAACAGTTGTAACACAAAAGACAACTAATGTGCTTACACAACATCAACAGCCTCTACAGGAAGTTCTTGCCCAAACATCTGTAAAATCAGAGCACACTTCAAAACCCAGATTTTTTGCTCCAGTTTCAAAAGCAATGACCAGTGGTCTTCCAGCCAATCATGAACTGAGGGAGCGGCTTCAGAGCCTGGCTAACAGGCAGAAGGGTTTGGCAGCTCGAACTGTTGATCAGAATGGTGGTAGTGTGCCAGCACTTCCCCAGAATAAAGGAGACACCAGAGGAGTACAACACCCACGTCCAACATCTCCTCACGTACACTTCAAGGAGCCACCTGCAGCTGGTAAAGAAGAAGGGAAGCAGTCCCCTCCAGTCTCACCCATCCCATACAAGAATACTGCAGTCGCTAGGTCAAGTGCCCATCCTGATAAAAGTGTTGTGGTGAATCTGCCAAATGCCTGGTCAGATGTCTCGTCAACAATTTCATTGTAACATAAGACTGAGAACATATGAAATGAAGAGTAGCAGTCTTAAGGACTGTTTTTGGTTAGAATCTATAATTTGTCACAATTTGCCCACAGTTGCAAGTAATAACACAACTATAAGCAACTTGTAATGCAGGTCATGTGAATACTTGTGTGAAATAAATGTAAATGAGGTAGTGTATGAGCAGAAAACCACACTTTTTGCTCAAATGATTCTGCTTCAGTAGCATTTTAATTGATGTGTTGTGCTAAGCtaaaaacaatgattttgtCAGTAATAAGTAGTTTATGGTAATGTATTGTTAACAGTAATGATGTACATTGTAAGTATAGTATTGTTAGTGTATTGTATTATAGTGTTagtaaatgtaaataaataattattaattgttgCATTAAGCTAAAAAAAGTTTTTGTAAGCAGCTTACAATAAGATGTGGTACTGTAAACAGTTAATGAAGTGCATTGTTAAGTGAAATATTGTAAGTAGTATATTGTACATAGTGCAGTGTCCATTTGTAAACACTgcttggtaaaaaaaattgttttgcagAAAACCCTCCagtattatttttgaaagtgtTCAATAAAATGCACAAACTGTCTGCCTGaggttaatttatttatcttggTTTAAACAAAAACATTAATATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DF94	Spindle and centriole-associated protein 1 OS=Xenopus laevis OX=8355 GN=spice1 PE=2 SV=1
Q8C804	Spindle and centriole-associated protein 1 OS=Mus musculus OX=10090 GN=Spice1 PE=1 SV=2
Q5RKG1	Spindle and centriole-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Spice1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005044 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15678 all species →	SPICE	Centriole duplication and mitotic chromosome congression	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031387 all species →	Family	Spindle and centriole-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31167 all species →	SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0046599 all species →	Biological Process	regulation of centriole replication	Interproscan
GO:0051310 all species →	Biological Process	metaphase chromosome alignment	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.46186.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.