Gene detail

Detailed information of pspe_0.1.m1.46204.m1 in Pachyseris speciosa

Genomic Location: Sc0000529:171278...207199
NR annotation: CAH3130634.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.46204.m1

ATGGAATCTTGGGTAAATTCACTGAGACCAAGAAAGAAACGGTTGAGGAATAACGACGGGGACTGGATCGACCTCAGTAGACCAGAGGGAATGACAATACAGCACTTGCATCCTGAAGAACAAGACCTGGCTCCAAATGACAAGGGTTCACCATCAGCTCCTAGAAAAAGGCCCTCACGGAGCAAGCCCGCTTACGATCCGTTCCTTCTGGTTCCCTGTCGCAAGTTTCCCTCACCTAGTGCGGTACCTTTTGATGTTCTTATCCAATCAGAAACCTTGGTGGTTATGGACACGCATGCGCACATGTCAACTACGGAAGTGATTGGTTTGTTAGGTGGATGTTACTTCCCTGGGACGAGGCTGCTGAAGACCCAAGCCTCTGAAGACCTTGCGCAACGTGGATTGGCCGTGGTGGGCTGGTACCACTCTCATCCTACATTCGCTCCAATCCCCTCTGTGCGTGATATCGAAACTCAGGCAAAATTCCAGGAATGGTTTGGAAAAGGAGGTGCACCGTTTATAGGCATCATTGTTAGTCCTTATAATTACAGTAATCCATCGAACCAATCACAGATAAGATGTCTGACAGTCAGTAACGAGTGGGAGTCCGCTGGCCAATACAGATTGCCTTACCAGTTCGACTATGAAGTGTATGAAGACGAGGCTGATGAAGATGACACGGTGGAACAAGTCAGAAGCATTGCTGACGACTATCAGACTTACCCGTTTCGGCCATTTACCTCGCGAGTACTCGCGAACTTTGTGGTATTTTATCGCACGTGGCGGAAAGATATGCGTGGAAGTCGCTTGGCTATTGTGGTTGCAGCTGATATTGCTGTATATGCTGCGGGGAGTGCTCGTAGTACGGGTGGGGCAGGAGCTGTGGCAATGCTAGTAGGGCCAAAAGCACCCCTTGTCATGGAAAGAGgAATGAGATCAATTCACATGCAGCATGTCTATGATTTCTACAAACCAAATATGTCCTCCGAGTACCCTGTTGTGGACGGGAAACTCTCTGTGCGCTGTTACCTCAATGCACTGGATCAATGTTATATGAGATACACAGAGAAAGGAAGATTACTTTATCACAAGACAAATTTTACTTTGGATGATATAGACTATGCCATATTTCACACTCCGTTCTGCAGGATTGTGCAGAAGTCACTAGCACGGTTGATGTTTCACGATTTTCTCTGTACTACTGAAAGCTCTGATCAAGAGAAATATGCTGATCTTGCAGAATATAGTGAAGAAAGgagaaatgatgatgatgatggtgatagtgataatgatgatgatggtggtggtggtgatgatgatggtggtggtggtgatgatgatgatagtgatgatgatgatggtggtggtggtgatgatgatgatggtgatgatgatgatgatagtgatgatgatgatggtgatggtggtgatgatgatggtgatgatgatgatgatgatggtgataatgataatgatgatgatggtgatgatgatgatggtgatgatggtgatgatggtgatgatgatggtgataatgatgatgatgatggtggtgatgatgatgatggtgatgatgatgatgatgatcgtggtggtggtggtggtgatgatgatgatgatgatggtgatggtgatgatgaagaaatcaaccatgcatcagatacTTTTTGTTTCTTGAGTGTTCGGCAACAGTCATATACcatatttatttttcttgaaTTAAGTGCCCAGgagcattttttgcacgataacagAAATGTCAAACTAGAAGAAACATTTCAGGATGAAGCAAAAGCCAAGGAAATAGAGAAGGCTTCAATGAAATGTAGCCAGAAGGTGTTTGATAAAAAGACTGCTCCTTCACTTGCCCTCGCTCGAGACGTCGGGAACATGTACACTCCATCGCTGTATGGTTGTCTAGCTTCAGTTTTGTTCAGTGAGCCACTTGAAGACCTGGCCGGTAAACGTATAGTGTTCTTCTCATACGGGTCGGGTCTTGCATCCGCCATGTTCTCATTTCAAATTTCTGGTGACGTCAGTCCTGGATCTCCTCTTGACAACCTGATTACGTCACTGAAGGATATCCCAGAACGCTTAGCAGCGCGACGTGAAGTTGAACCTGCAGAATTTGTGAAAACTCTCACTACTCGCGAGCACACTCATAACAAGAGTAATTACTCGCCAACTTGTTCTGAAGAAGATCTGTTCCCTGGCATGTATTATCTGACGAGTGTTGATGAGAAGTTTCGGCGGACTTACCAGAGAAAATCAGACCAATCTGCTGAAGGAAGCTGCATGGTGGCTTGA

Transcript

pspe_0.1.m1.46204.m1

attccaagatggcggaatccgATGAAGAAGTTGATGTGGAGGACATTTCCGACGCCGAGCAAATATCTCATTTACGAGATTTAGCCGAAGTAGATCACAAAGACAACTGGTACGATAAAGACATTGGAAATCAGAGTTTTTTAAACTCTTCATCTGCTCCTTTTTCCTCTGAATATTGCGACCCTAATTCATGGTTTTTGGATACAAATACGGTTTGGTCACTGGATAATTGCACTGATGACAAAAGTAGGGTAACTATTGAAAAGATGATTCTGGAGGAACAAATGTATGCTTACAGATCAGTGCCTTTGAAACTAGAAAAACCAGCAGGGActgagaaaagaaaacaatcctGTACTGGAAGGTACTGATTTTAAGctatttaatttttatgatttACACATTTTGTAAAAGGTGGACCTTGTAAAACACAGGGAATACAACATACCAATGTTTACTTCAGTCAGGCCTCTCTTTTGTACAATAAATCACTTCttttataagaacctttttCTACTCAAGGTTTCCAAATGCTAAAAAGAGCAGTATAAAATGTGGAAGGTAAGTTGAACAAtccttttaaaataatttattttggaATTCTTGTCCATCTTTGGAGAGTTAAATGCTAAATGTGCCTCACAAGAGAGCAGGGCAAGTGCTGAAATATCAGATTCCCAGGAAGGCAATTATATTTCACAGGTAGGCAAATATGTTTGGATTTAACTTCCTCATCACAAAAAATTACCTTGATATGCTTAAGGCAGGCAGGCGTTTCTCCCTGGATGCCATGAGTGATCCATTGGGACTTCTGCTGCTCAgagctttttttattatttgtttatttggctATACAGAGCTAACATGGATGTACTGAGGGAACCCAGTAGAGGCTAAAAGTTTATTAACACTGGGCACCTCAAGACAACACACGCTGCATTTATATTTCTGTTTCTCTTAAGAGGCATATCAAAGCTTACCTCTCTGAAGATGCACAAAATTGTTTTACTCTGTAAACTGGTAAGGGGCCCTGTAGCTTGTACgatttgaaatttttgtttattttgccaCAGTAGAGAAGCTTCCATAACTCACAGAAAACCCTGGACAGCAGATGAGCAGGAACTGTTTGAACAGGGACTGAAGCTGTATGGGCGTAGCTGGACTAAAATATCAAACATGATTGATACTCGAACAGCTCTCCAGGTTAAAAACTATGCCAAGCAGTACTTCAAGCAAAAGAAGAAAACTCTTGTGAAGTCTGAAGAACATGTTTCCCAAGGAATAGAAGAACAGTGTGATGATACATTTCTGCTGGCTAATATCGAGGAGGTTGTACATGAAAATGGTGAACCTGAACCTGAACCTGAACATGAGCAGACAAGTCAAACCACCATTGCTTCACTTGGTGACACAAAACCAACACTAGATTATGCATCGGACGAAGATGTTGAAGTAGATATTGATGGATCAGATAACGAAGAAGAACGTAATAATTTAATTCCAGGTCAAACAGCTTCATGTGCCGAGGATGTTTATGCTGCTCTTGTTCGGGCTGCAGCAACCGAGCAAAATATACTGGAatcagtaaaacaaaacaaggttgaGATCACCTGTTCAGAAGGGATTTCTAGTGATGTGATGCCAAAGGATTTATTAACAAGCACAGTGAAGGTCGAAAATACTTCCTCTGTTATTATCAGCCACATTTCTCAGTCTGGGAACGAAGAGACGTCGAGTAACCCCACAAACCTATCTTATGCGTGTGTGGAGACATCTTTTGGGGAACCAAGGCCAGGAGAAGAGGAAAACAGCTTTTTCAACAGCACGGGTAAATCCGAGGTTTTCGacaattttaatattttgatgCGAGACTGCCCTGACAATTGCACTTCAGAACGTCAGTTTTGTGGAGATAACCATGAATGCAGCGCAGATGCACCTGTGGGTAACAACACCTCAATTCCAACAAATGCGAGTCACGCTGCAAATCAGTCATGTTGCGTGACGACCGACATTCGTCACGCTGTGTCAGCTGAAAAGACTGTCAATGAACCCGTCAATGCAAGCAGCATTTCTCTTGATTCGGTTGAAACCAATACACATGGTCGTGAGCCTAGTGGCAGAGCTGAGGGGAAGAGCTGGGTTCCAGTCACGTGCGGTGAAGTAACATGCTCTGAGTTGATAAATCCCTCCGACCGAGAACAGCCTGGGGCGAGCGCTGAGGATCAGAATGCTCTTTATAAGCAAATTGTGATCGACAGAGATCTTATTCAAGAtgaggagaaagaaaataacGTGGAATTTTTCATGGGAAGAGCTCCTAAAACTCCAGAGCGATACATGAAAATCCGCAACTACATTCTCGATATGTGGGAGAAAACGAAACCAAGTTATCTTTTTAAAACTGCTGTGAGAGGTGGCCTTCGAAACTGCGGTGATGTCAATTCTATTGGTCGAGTTCACGCTTTCTTAGAAGACATTGGAGCCATAAATGAGGGTGTCTCGATAGACCAGTCCCCGGGTTAGGCAACAAGGCGAGGTCACCGATGCTAAAGAAAACGTTCACATGGAATCTTGGGTAAATTCACTGAGACCAAGAAAGAAACGGTTGAGGAATAACGACGGGGACTGGATCGACCTCAGTAGACCAGAGGGAATGACAATACAGCACTTGCATCCTGAAGAACAAGACCTGGCTCCAAATGACAAGGGTTCACCATCAGCTCCTAGAAAAAGGCCCTCACGGAGCAAGCCCGCTTACGATCCGTTCCTTCTGGTTCCCTGTCGCAAGTTTCCCTCACCTAGTGCGGTACCTTTTGATGTTCTTATCCAATCAGAAACCTTGGTGGTTATGGACACGCATGCGCACATGTCAACTACGGAAGTGATTGGTTTGTTAGGTGGATGTTACTTCCCTGGGACGAGGCTGCTGAAGACCCAAGCCTCTGAAGACCTTGCGCAACGTGGATTGGCCGTGGTGGGCTGGTACCACTCTCATCCTACATTCGCTCCAATCCCCTCTGTGCGTGATATCGAAACTCAGGCAAAATTCCAGGAATGGTTTGGAAAAGGAGGTGCACCGTTTATAGGCATCATTGTTAGTCCTTATAATTACAGTAATCCATCGAACCAATCACAGATAAGATGTCTGACAGTCAGTAACGAGTGGGAGTCCGCTGGCCAATACAGATTGCCTTACCAGTTCGACTATGAAGTGTATGAAGACGAGGCTGATGAAGATGACACGGTGGAACAAGTCAGAAGCATTGCTGACGACTATCAGACTTACCCGTTTCGGCCATTTACCTCGCGAGTACTCGCGAACTTTGTGGTATTTTATCGCACGTGGCGGAAAGATATGCGTGGAAGTCGCTTGGCTATTGTGGTTGCAGCTGATATTGCTGTATATGCTGCGGGGAGTGCTCGTAGTACGGGTGGGGCAGGAGCTGTGGCAATGCTAGTAGGGCCAAAAGCACCCCTTGTCATGGAAAGAGgAATGAGATCAATTCACATGCAGCATGTCTATGATTTCTACAAACCAAATATGTCCTCCGAGTACCCTGTTGTGGACGGGAAACTCTCTGTGCGCTGTTACCTCAATGCACTGGATCAATGTTATATGAGATACACAGAGAAAGGAAGATTACTTTATCACAAGACAAATTTTACTTTGGATGATATAGACTATGCCATATTTCACACTCCGTTCTGCAGGATTGTGCAGAAGTCACTAGCACGGTTGATGTTTCACGATTTTCTCTGTACTACTGAAAGCTCTGATCAAGAGAAATATGCTGATCTTGCAGAATATAGTGAAGAAAGgagaaatgatgatgatgatggtgatagtgataatgatgatgatggtggtggtggtgatgatgatggtggtggtggtgatgatgatgatagtgatgatgatgatggtggtggtggtgatgatgatgatggtgatgatgatgatgatagtgatgatgatgatggtgatggtggtgatgatgatggtgatgatgatgatgatgatggtgataatgataatgatgatgatggtgatgatgatgatggtgatgatggtgatgatggtgatgatgatggtgataatgatgatgatgatggtggtgatgatgatgatggtgatgatgatgatgatgatcgtggtggtggtggtggtgatgatgatgatgatgatggtgatggtgatgatgaagaaatcaaccatgcatcagatacTTTTTGTTTCTTGAGTGTTCGGCAACAGTCATATACcatatttatttttcttgaaTTAAGTGCCCAGgagcattttttgcacgataacagAAATGTCAAACTAGAAGAAACATTTCAGGATGAAGCAAAAGCCAAGGAAATAGAGAAGGCTTCAATGAAATGTAGCCAGAAGGTGTTTGATAAAAAGACTGCTCCTTCACTTGCCCTCGCTCGAGACGTCGGGAACATGTACACTCCATCGCTGTATGGTTGTCTAGCTTCAGTTTTGTTCAGTGAGCCACTTGAAGACCTGGCCGGTAAACGTATAGTGTTCTTCTCATACGGGTCGGGTCTTGCATCCGCCATGTTCTCATTTCAAATTTCTGGTGACGTCAGTCCTGGATCTCCTCTTGACAACCTGATTACGTCACTGAAGGATATCCCAGAACGCTTAGCAGCGCGACGTGAAGTTGAACCTGCAGAATTTGTGAAAACTCTCACTACTCGCGAGCACACTCATAACAAGAGTAATTACTCGCCAACTTGTTCTGAAGAAGATCTGTTCCCTGGCATGTATTATCTGACGAGTGTTGATGAGAAGTTTCGGCGGACTTACCAGAGAAAATCAGACCAATCTGCTGAAGGAAGCTGCATGGTGGCTTGATTAGACAACTCAACAGGCATAACATCATCTTTATTGTGTTGGAGGATGGTACGCCTCTGATCAAACTATATACAGTAAGCAACTGTACTTGATCCGTTTTCCATTCTGTAGCCTTTTGTGGACTGTTAGCTTGATgagatttctttttctttggtgtATCCGTTCTGCAACCACAATGCATGTCACCGCCATTTGCCCACCTGGCTGAGGAGGAACAACGAAGATTAAAGGTGTTGCCATACCGTGCGTGCATACTTGCATACTCACGTGTTATTGAATTTATAAAGCGGGAATCTGCAAACTATTGCGCGCAAAAGCATGTATCACTTCTCTGAGGAAATAATTTCCAACCACCTTCGTGTCCCTTCCTTTTGTTATAGTCCCCTTCAACTCGTTGTAGAATTACACCGTTTGGCCCGGGTATTTCAAAATCTATTCCTTTAAACGTAccgtatttcctcaaataagcgcccgagcgcttatttaaaatttcggtcAAAGGAGGGGACGCTTATTCGAATGAGGGCGCTTAAACGAACTGTaactctattttggctaatgcacgTAAAAGAGCTCTGGAGGTACAAGGAGACAGAAATAACTGGAGGGCACTTAcggaaaatagactgttctcctacatgcactgatgccggtgtagttgaagcttgaAAGATTGCAAAGAAAGTGACAGTTtaatggaaacaggttttcgTTTTACCCCTACTACATAAGAAAGTGAGGGGATGGGGGCTTTTATTCGAGGGGGCGCTTGTTGACTATTTTGGCGGAGAGGGTGgacgcttattcgggggagggcgcttattagagCTTGGGctcttattcgaggaaatacggtatctTTTAGCACTTTACAGCTCTTGCACTTCGATGGATCATTATTACCAATCTCTATacgttgttacctttatagtcgTATCAAAGAAATACCCAATCAGTTTTGAATCCgctcccacaattttttttaacaatccGCTCACaccagtttccagcactttccagctCTTGCGCTTGGAAGGATCAttattaccaatctttatacgttgttacctttataggcCTATCAAAGAAATACCCAATcagtttccgaaaattttaggtgGCTTTGAATCCGCTCCCACATATTTTTTTAACCATTCGAAAAATTGTATCTTATTATGCCAATTATGtcccgaaaataaaaaatgagatTTACCGGGCTGGTAattgctggaaaccggtgtgagccaccttTTATGAAAGTTTAGGTGTGTTTATGGTGGGGTTGAATCAATAATATTAGATAGATAAGAAAACGACTAACCCTATAATTATCGTTCgcgaaaaaaagaaacactaaGACCAAAATGACGTTGAGCGTCATATATACATTTTATACCGTCTGTTTATTTTCCATTTTGGCAGCGTTGGTTTGAAAAGAACTGCTCATTGAAACTCTACAGTTGCCAGCCTTTCAAAATTTAAGATGCCCTTTTTATCTTTTGTCTTCTTTATATTCACCATAAATAAATCCATCACAAGAGCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54868	Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens OX=9606 GN=HMGCS2 PE=1 SV=1
P22791	Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hmgcs2 PE=1 SV=2
P54869	Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus OX=10090 GN=Hmgcs2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005551 (this species only)
Ubiquitin family	UBD\|Other\|Jab_MPN · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01154 all species →	HMG_CoA_synt_N	Hydroxymethylglutaryl-coenzyme A synthase N terminal	Domain	Interproscan
PF08540 all species →	HMG_CoA_synt_C	Hydroxymethylglutaryl-coenzyme A synthase C terminal	Domain	Interproscan
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013528 all species →	Domain	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal	Interproscan
IPR013746 all species →	Domain	Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43323 all species →	3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004421 all species →	Molecular Function	hydroxymethylglutaryl-CoA synthase activity	Interproscan
GO:0006084 all species →	Biological Process	acetyl-CoA metabolic process	Interproscan
GO:0010142 all species →	Biological Process	farnesyl diphosphate biosynthetic process, mevalonate pathway	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.46204.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.