Gene detail

Detailed information of pspe_0.1.m1.46216.m1 in Pachyseris speciosa

Genomic Location: Sc0000529:381472...396027
NR annotation: CAH3130620.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.46216.m1

CCTTAAGctcaaaacaaaatggcggtcaaagtgaaataaaattCTTTCTCGCCTTTGAACACATGCACCCTTAACGAAACATTTGGCAAACCGAAAAGCTTTTATAAAAATGGTTGAATTCCAAGCAATTATTATGGCAGCCGGTACAGGCTCCCGTATGTTTCCTCTAACTGAGAGAATTCCAAAAGCCTTGTTACCTGTTGGAAATTTGCCGGTGATTTGGTACCCAATCAACTTGCTTGAAAAAGCGGGCTTTGAAGAGATAATCGTTTTAGTTCTGGAGTCTGCAGTTACACAGTTCCATCAAATTTTACCAAGTGTTTGCAATCCAAAGCTGAAATTAGATTTTGTTACGATTCCTGATGATAAAGACATGGGCACTGCTGATTCCCTGAGGCACATCAAGGATAAGATAGAGaAAGATGTTTTTGTTGTGAGCTGTGATTTAGTCACTGATGTTGCCCTTCATCATCTTGCTGATATTCATCGGAGCCATGAAGCTACTGTTAGTGCTTTTCTAGCTCCTGTTCCGCAGACGAGTGCTGACAGAGAAGCTGCTAGTAATCCCAAGGCAAAGAAGAAAACTGATAGCACAGgTCAACTTGATTACATTAGCATAGACTCAAGGGAGAACAGGATTTTATTCTTTTCGACTGAAGCTGATCTTGAAGAAACTTTAGTGATTAGGAAACCACTTCTTAAAAGaTATCCTTGCATCAACATTGTAAAGAATCTAATGGATGCCCATTTGTACATTATTAAGAAATGGGTAGTGGACTATTTAGCAGAAAACAGaTCAATCAGTTCAATTAAGGGTGAACTGATCCCTTACCTGGTAAACAAACAGTTTCAGAAGCACAAGAATGTGAACACTTGTATTGATGGATGTCCTGAGAGTAACGCAAATGTCCAAGACTCAGCTAATAATGTTTATGACTTTGTTAAAGAGGATGACATCACGTTATATACAAGAGAGCTGTCTTCATGGAGTGGTACACTGACAGACATTGACCACAGTAATGTTATCAGGTGCCATGCATATGTCATGGATAGTGGAACCTGTCTTCGTACGAATACTGTTCCACTCTATATGGAGGCAAACAGACAGATATCAAAGCTTCTTCCTTCGTTAACATCAAAAGAGATTCCTCTGATTCATTCAAAGGCATCAATCAAACCCAAATCACAGGTGGGAAATGACTGCATGTTGGACGAGAGTGTAACTGTGGGTGAAAAAGTTTCAATCAAGAAATCTGTGATTGGTAAACACACCACCATTGGAGAGAAAGTCAAGATCAGTAACTCTGTGATCATGGATCACGTAACAATCAAAGACAGCTGTAACATCCAGGGAAGCATTATCTGTACAAATGCTTACATCAAAGAGAATGCTAGTCTTAAAGATTGTCAGGTTGGAGACTCTCATACAATCCCAGAGAAAgCTGATCTCAAAGGAGAGGCCCTGATTGCAGAACAGATGATGGACTTTGAATAATACTagaataaaacaaacaataactCTTTGACAAATCCATATAATTTTATTGACTATTAATAACTAAGAttgtttaaaaaacaatttaaaagaaaacttttaAGGCTCTAGTATACCCAAGGACACCTTAATTTTGTGGCTCAAGTTGCTACATACTTTTTACTATCTTCCTGGGAATCCTAGCTAGCAGTCTGAGGACAACTTTACTGTTTCTCCTCTCTCATCCAGacttttaaatatttaaaaactCAGTTATTGATTCTTGTTTTGTAAATGGGAACAAGCTGAGCTCTCGACCCAAGTTGCAAATTAATTTACTAAACCATTATGCCAATGTATTTCAGGAAAGGTGGTGAAGACATACGTTAAACATCAGCTTAAAACTGATAATAACAAGATCAAACTTTTCAAGATTACAAGTGCCTAATAAATACATGGAtgacattatttattttctatGAAAACTTTCCCCAAATTGCTGTGTGGTCTTATGTGAGTAATAGCCTACTCTTTGCCAATATTTCTTCATATAAtcataacattaaaaaaaacatttggaCCCAATACATGACACCCATAAATAAACATTTAACAATATCTCCACAAGTGCATGATGTTCTCTAAAACTACAGATAGTGATGGTGTACAATATAATAACACAGTATATTTACATTGACCTACATGTATATTTTAaatagtcataatattaaaaaatgtaGCTTACAAATCCCTGGCTTAATAAAGTTCACAACTTTTACAAATCCACAACATTTACAAAGACCACTATtccaataaattattaatatacTTAACCAAGACAACCACTGCTTATGCCATATCACCAACAGTATTCTGTAAAAATAAATATGCTGgac

Protein

Uniprot

Uniprot term	Description
A5PJI7	Translation initiation factor eIF2B subunit gamma OS=Bos taurus OX=9913 GN=EIF2B3 PE=2 SV=1
P70541	Translation initiation factor eIF2B subunit gamma OS=Rattus norvegicus OX=10116 GN=Eif2b3 PE=2 SV=2
Q4R6T3	Translation initiation factor eIF2B subunit gamma OS=Macaca fascicularis OX=9541 GN=EIF2B3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00483	NTP_transferase	Nucleotidyl transferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051960	Family	Eukaryotic Initiation Factor 2B Subunit Gamma	Interproscan
IPR005835	Domain	Nucleotidyl transferase domain	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45989	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002183	Biological Process	cytoplasmic translational initiation	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005851	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0032045	Cellular Component	guanyl-nucleotide exchange factor complex	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03241	EIF2B3; translation initiation factor eIF-2B subunit gamma	-	Translation factors	ko03012	deepkoala