Gene detail

Detailed information of pspe_0.1.m1.47243.m1 in Pachyseris speciosa

Genomic Location: Sc0000555:514184...579605
NR annotation: CAH3145788.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.47243.m1

ATGAGGGACACAAGATCGGGCGAAAGAACAGCGGTTGAGGCCGTCGGAAGTGGAATTGCCGAAGCCGCGGCGCTAACCAGTGGCGAGGAAACAGCAACAGGCTCGCCAGGCTGCGAAGAAGCGACGGATAACGTCCCGCTTGTGGCCGTACTTGAAACGGGAGCGGAGGAAACTTCGTTGACAGAAAAAGCCGCTGCTAGGCTGTTGTTGGTCCTGTCTGAGGCACTCACAGTGCTGGAGAGAATGAAACACAGAGGGGCTGTTGGATTTGAAGAGAACTGTGGAGATGGGGCTGGTGTTATGACTGGAATTCCACATGCATTTTATCAGCGGGTCATACAAGAAAACAAACTGGGATTCAAGTTACCATCACCAGGTGATTATGCAACTGGGATTTTCTTTGTTGACACAGATCCAAACAAGGCCAAAGTTTGTGAAGACATGTTCTCATCGCTTGCAAAAGAGTGCAACTTAGAGGTTTTAGGTTGGAGAGATGTACCATTTGATAACAGGGATATAGGACAAACTGCTGTGGCGAGTCAGCCTCTTATGAGACAGGTGTTTGTGACAAGCTCACTAGACCAAGAAACATTCAAAAAACAGGTGTACCTCGTGAGAAAAATGGCATCAAATAGAATTGGCACCAAAAATCGCCGCTTTTACATCTGCAGCTTGTCTTGTGAAACTATCGTCTACAAGGGAATGTTGAAACCAGTGCAACTCCAAGGTTTCTTTCCTGATCTACATTCAGAGGATTATTGGACTCACTTTGCCTTGGTTCATGGTCGGTTTTCAACAAACACATTTCCTAGCTGGGAAAGAGCTCATCCAAACAGATATCTGGCCCACAATGGAGAAATAAACACCATAAGGGGAAACATTAACAATATGAACACAAGGGAGGGCACCATGTTTAGTAAATACTATGGCAGCAATACTCAAAATCTCTTTCCAGTTGTTGAAGCAGACCTTTCAGACTCTGGGTGTGTTGATAATGTGCTTGAACTTCTCATCATGGCAGGAGGTCGTTCCCTTCCAGAGGCTATTATGACCATGGTTCCTGAGGCGTGGCAGGGCAACAGTTTGATGAACCAGGACAAACAGGATTTTTACCGCTGGATTTCCTGTTCTATGGAAGCCTGGGATGGTCCTGCTCTTTTCACATTCTCTGATGGACGGTACATTGGGGCCATTTTGGACAGGAATGGCCTGCGTCCATCACGATACTATGTGACTAAACAGGGGTTCATGGTGATGGCTAGTGAAGTTGGAGTCAGCACTTTTCCAGATGAGGAAATTGTACAAAAGGGGCGTTTACGACCAGGAAGAATGCTCTTAGTGGATACCACCATGGGCTCTGTTGTTGAAGATCATGAGCTAAAGCGTGAAATGGTGAGCCTGCGACCATGCACTGAACTGCTTAAAAGAAGTGTCAAGACACTTAAAGATATCCATCAAGCTTTCCAAGCTTCCAGGAACCTCTCTGGAGATGAGTTACCCTTGATACAGCACCCTTCACAGAATGAACTGATTCATAGAGACAGACGGCTGCCAATGTTTGGCTATTCCCTTGAGGATCTGAACATATTAATTTTGCCGATGGTCAAAAATAAGAAAGAAGCTCTAGGGTCTATGGGGAATGATGCACCACTGTCCTGCCTTTCAATGTACCCACAGTTGGTATTTGATTACTTCAAGCAGCTGTTTGCTCAGGTCACAAATCCTCCCATTGATCCAATTCGTGAGAAGATTGTGATGTCATTGGCGTGCCCTGTTGGACCAGAGCCAAATCTTCTAGAGCCTGATGCGGCAGGTTGTCATCGAGTGTACTTAGATCATCCAATTCTTACATGTGCTGATGTGGAAGCTATCAAGGGGTGTGGCCTGTCTTGGTGTAAAaGTCAGACTATCGACATGGTTTACCCAGTACAAGATGGAGTCAACGGTCTGATTCCCTCACTTGACAGAATTTGCAAAGAGGCCTCTGAAGCTGTGGAGAATGGTTGTGCGTTTATCATTTTAACTGACAGAGCTGCAGGACCACACCATGTTCCTATGAGAGAAATTCATCATTTTTGTGTCCTTCTGGGTTATGGAGCAGATGGGATTTGTCCTTACTTGGTTTTTGAGACTGTTGCCAATCAGCGAGATCAAGgcTTGTTGGATCCTCCTCTCTCAGACAAAGACATCGTCCAGAACTACAGTGCTGCAGTGCAGAAGGGCATTGCTAAGGGAGCTCAAATATTTGAGGCTGTTGGGCTAGCAGAGGAGGTTATTGACAAGTGCTTCATTGGAACAGCATCCCGTCTCAGTGGAGTGACTTTTAAAATCCTTGCTCAAGAGGCCCTGAGCAAGCACAGAGTGGCATTTTCTGATCGTGAATGCGACAATGTCTTGATTAATAACAAGggTGAGTACCACTGGCGTGTGGGAGGAGAGAAGCATATAAATGATCCCAGTTGTATTGCAAACCTTCAGGATGCAGTCCGAATGAAGAATCAACCTGCCTATCAGAAGTACAGTGAAACCTCCATTGAAGTGGTACGCTCCTGTACCCTGCGTGGACAGCTGCAGATTAAATTTGCCAAGAAACCCTTGGACATCTCCGAAGTTGAACCAGCCTCAGAAATTGTCAAGAGGTTTGCCACAGGTGCCATGAGTTTTGGGTCCATTTCATATGAAACTCATACAACTTTGGCAAAGGCCATGAACAAGATCGGTGGAAAGAGCAACACAGGAGAGGGGGGAGAGGATCCATTGAGAGGAGCCGACAGTAATACAAGATCTGCCATCAGACAAGTAGCTTCTGGAAGGTTTGGAGTGAATGCTTGGTATCTGGCAATGGCAGAAGACTTGCAGATTAAAATGGCACAGGTCTCCAAGGAAATTGCAAAGACTCGTAAGTCTGTCCCTGGTGTTGGACTCATCAGTCCCCCACCTCATCACGATATCTACTCCATTGAAGATTTGGCTGAGCTTATTTACAACCTGAAGTGTTCCAACCCTCAAGCCCGTATCAGTGTGAAGCTTGTTTCTGAAGTTGGAGTTGGTGTAATTGCTGCTGGAGTTGCGAAGGGTCATTCTGAACACATTACCATTTCTGGTCATGATGGTGGAACAGGGGCCAGTACGTGGTCAGGTATTAAACATGCAGGGTTACCATGGGAACTCGGCATCGCTGAAACCCATCAAACTCTTGTACTGAACAACCTTCGCAGGAGAGTTGTCCTACAAGTTGATGGACAGATCAGAACTGGGCGTGATGTGGTGGTTGGGGCACTGCTGGGTGCTGATGAGTTTGGATTTTCCACTGCTCCGCTCATTTCCTTGGGTTGCACGATGATGAGAAAATGTCATCTGAACACATGTCCTGTTGGAATAGCCACACAGGATCCTGTACTGAGAAAGAAGTTTGCAGGAAAACCAGAGAATGTCATTAACTTCTTTTTCATGCTAGCAGAAGAGGTTCGTGAGTACATGGCGAAAATGGGATTCCGCAAACTGAATGAAATGATCGGAAGATGTGACCTCCTGGAACCTGCAGACCCTCTGAATGAAAAAGTGAAGTTGCTAGATTTTAGTCCGCTTCTGATGACAGGTAACGAATTAAACCCTGGTGATCACCTGGGTGGAAGTGAACCACAAAACCACAAACTGGAGCTACGAAAGGACAATGAACTCATTGAAGCAGCGAAGGAAATTCTCAATGGTGGCACAGAGAACTTGTACTTGAAAATACCTGTTATGAACACTGACCGTGCATTTGGCACAACACTCAGCTACCACATTGCAAGGAAATTTGGTGAGAAAGGTCTTCCAGAAGGCACAATTCACATCAAAGCAAGAGGATCTGCAGGTCAGAGCTTTGGAGCGTTCCTTTCTCCTGGTGTTACACTGGAGCTGGAAGGAGATTCAAATGACTATGTTGGCAAGGGTTTAGCAGGAGGTAAGGTCATTGTTTATCCAAGCAGCCAGCATCCCAGTGACTACAAAGCAGAAGAGAACATCATTGTCGGGAATGTTTGTTTCTATGGTGCCACTGCTGGCAAGGCCTTTATCAGGGGGATTGCTGCTGAAAGGTTTTGTGTTAGGAACTCTGGAGTTACAGCCGTGTGTGAGGGCGTTGGAGACCATGGCTGTGAGTACATGACAGGAGGTCTATGTGTCGTGCTCGGCTCCACTGGTCGTAATTTCGCTGCTGGAATGAAGAAGAACTTTGCATCACTTTGTAACCAAGAGATTGTTGACCTTGAGCCCGTGACCGGGCCTGATGTGGAGCTTGTCAGGGGACTGGTGCAGGAGCATTACCAGTTGACTGGTTCGACCGTGGCCGAGCGTCTGCTGGAGGACTGGGGAACTTCTGTCAAGATGTTTGTTAGGGTGATGCCTCGCGACTACAAACGAGCCATACAGCAGTTGAAAGAAGAAGAGGAGGCAGAgAAACTCAAGAAAGACACTCACAACGAAGTGAATGGCGAGACTAATGGTGAAAAGACAAATGGGGAGAAGATAAACGGAGAGAAAACGAACGGAGAAAAGACAAATGGAGAAAAAACGAATGGAGAAAAGACGAACGGAGAGAAGCATGAACACTCTCCTTCCTTGGTCAAGAAACAAACGGATTCCAGTTTGGCTGATATCGAGGCGGCCATTCCTGACACAACAATGGAACAGAAGAACATTGACAGAGTGCTGGATAAAAACAGGGGATTTGTTAAGTACTCCAGAAGCAAGGTTAAGTACCGTCCACCAAAACAACGGATGAAGGACTGGGACGAGGTTTACTACAACAAAGGCAAATCAGAGTTGAAGGTCCAGGCCGCTAGGTGTATGGAGTGCGGAGTGCCCTTCTGTCAGTCTCACACTGGCTGTCCTTTAGGAAACATCATCCCCAGATGGAACGACTTGGTGTTTCAGGACAAGTGGAAAGAGGCTTTGGATCGATTGTTGCTCACCAACAACTTTCCAGAATTCACTGGTCGTGTCTGCCCTGCACCTTGCGAGGGTGCTTGTGTTCTCGGAATCAATGCTGAGCCGGTGACAATTAAGAAAATTGAGTGCGCCATTATCGATCATGGCTTCGAGCAAGGGTGGATCACACCTCAGCTTCCAGCTCATCGAACAGGAAAAAAGGTTGCCATTATTGGCAGTGGTCCTTCGGGACTAGCAGCTGCGGCACAACTCAACAAGATCGTCCAGCGTCGGGTGGACCTGCTAGCGGCAGAAGGAATTACGTTCATTAATAACGCTGAAGTGGGAAAGACTGTTGATGCACAGCAGATTTTACACGATAATGATGCAGTATTGTTGGCTGTGGGCTCAACATGCCCTCGTAATATTCCTTTGCCAGGCCGTAACCTGGAAGGCATTCATTTTGCCATGCAGTTTTTGGAGACCTGCCAGAAAAGGCTCATGGGTAATTATAACCTACCGTCCCTTGATGCCACTGGGAAGGATGTTATCATCATTGGCGGCGGTGATACCGGTGTGGACTGCATTGGAACTTCACTCAGACAGAATGCCAAAAGCATCACCAATTTCGAAGTCTTGGGCTCGCCTCCCAAGAGCAGAGCCGCGACCAACCCGTGGCCTACCTGGCCACGAATCTTCCGCGTTGAATATGGACACGAGGAGGCTGCTTTGAAATATGGATCTGATCCTCGTGTGTTCAGCATCATGAGTAAGGAATTTATAGGAGACGAAAAAGGCCATGTGAAAGGAATAAGAACAGTGGAAATTAACTGGGTGCAGGATGCTACTGGCAGATGGCAAATGGAGGAGATTGCAAACTCTGAGAAAGTTTTCAAAGCTGACCTGgatCCCAGAAGTAATTTTGCCACAGAGAAGAACAAATTCCTGACCAGTGTTCCAAGAGTGTATGCTGCTGGAGATTGCCACCGCGGCCAGTCTCTCATAGTGACAGCCATTTCTGAAGGAAGGCAAGCCGCTCGCCAAATAGACCTCGACCTCATAGGAGCATCATCCCTGGCAGGACCCGGAGGACAAATACATAgttatttatttaaatCTAAGCTGGATTTCCGAAAACGGTTTTTAGATTTACAGTTCTGTTTAGTTTACTTTAGTTTCTTAGAAAATGTTGTCACCTGGAAAAAATTTTATCAAAACCTCTTTCCCATGTTCCTTTCCTTTGCTCTTAAACTGACAAGGATTCCCAGCCATGGGAGA

Transcript

pspe_0.1.m1.47243.m1

Protein

pspe_0.1.m1.47243.m1

MRDTRSGERTAVEAVGSGIAEAAALTSGEETATGSPGCEEATDNVPLVAVLETGAEETSLTEKAAARLLLVLSEALTVLERMKHRGAVGFEENCGDGAGVMTGIPHAFYQRVIQENKLGFKLPSPGDYATGIFFVDTDPNKAKVCEDMFSSLAKECNLEVLGWRDVPFDNRDIGQTAVASQPLMRQVFVTSSLDQETFKKQVYLVRKMASNRIGTKNRRFYICSLSCETIVYKGMLKPVQLQGFFPDLHSEDYWTHFALVHGRFSTNTFPSWERAHPNRYLAHNGEINTIRGNINNMNTREGTMFSKYYGSNTQNLFPVVEADLSDSGCVDNVLELLIMAGGRSLPEAIMTMVPEAWQGNSLMNQDKQDFYRWISCSMEAWDGPALFTFSDGRYIGAILDRNGLRPSRYYVTKQGFMVMASEVGVSTFPDEEIVQKGRLRPGRMLLVDTTMGSVVEDHELKREMVSLRPCTELLKRSVKTLKDIHQAFQASRNLSGDELPLIQHPSQNELIHRDRRLPMFGYSLEDLNILILPMVKNKKEALGSMGNDAPLSCLSMYPQLVFDYFKQLFAQVTNPPIDPIREKIVMSLACPVGPEPNLLEPDAAGCHRVYLDHPILTCADVEAIKGCGLSWCKSQTIDMVYPVQDGVNGLIPSLDRICKEASEAVENGCAFIILTDRAAGPHHVPMREIHHFCVLLGYGADGICPYLVFETVANQRDQGLLDPPLSDKDIVQNYSAAVQKGIAKGAQIFEAVGLAEEVIDKCFIGTASRLSGVTFKILAQEALSKHRVAFSDRECDNVLINNKGEYHWRVGGEKHINDPSCIANLQDAVRMKNQPAYQKYSETSIEVVRSCTLRGQLQIKFAKKPLDISEVEPASEIVKRFATGAMSFGSISYETHTTLAKAMNKIGGKSNTGEGGEDPLRGADSNTRSAIRQVASGRFGVNAWYLAMAEDLQIKMAQVSKEIAKTRKSVPGVGLISPPPHHDIYSIEDLAELIYNLKCSNPQARISVKLVSEVGVGVIAAGVAKGHSEHITISGHDGGTGASTWSGIKHAGLPWELGIAETHQTLVLNNLRRRVVLQVDGQIRTGRDVVVGALLGADEFGFSTAPLISLGCTMMRKCHLNTCPVGIATQDPVLRKKFAGKPENVINFFFMLAEEVREYMAKMGFRKLNEMIGRCDLLEPADPLNEKVKLLDFSPLLMTGNELNPGDHLGGSEPQNHKLELRKDNELIEAAKEILNGGTENLYLKIPVMNTDRAFGTTLSYHIARKFGEKGLPEGTIHIKARGSAGQSFGAFLSPGVTLELEGDSNDYVGKGLAGGKVIVYPSSQHPSDYKAEENIIVGNVCFYGATAGKAFIRGIAAERFCVRNSGVTAVCEGVGDHGCEYMTGGLCVVLGSTGRNFAAGMKKNFASLCNQEIVDLEPVTGPDVELVRGLVQEHYQLTGSTVAERLLEDWGTSVKMFVRVMPRDYKRAIQQLKEEEEAEKLKKDTHNEVNGETNGEKTNGEKINGEKTNGEKTNGEKTNGEKTNGEKHEHSPSLVKKQTDSSLADIEAAIPDTTMEQKNIDRVLDKNRGFVKYSRSKVKYRPPKQRMKDWDEVYYNKGKSELKVQAARCMECGVPFCQSHTGCPLGNIIPRWNDLVFQDKWKEALDRLLLTNNFPEFTGRVCPAPCEGACVLGINAEPVTIKKIECAIIDHGFEQGWITPQLPAHRTGKKVAIIGSGPSGLAAAAQLNKIVQRRVDLLAAEGITFINNAEVGKTVDAQQILHDNDAVLLAVGSTCPRNIPLPGRNLEGIHFAMQFLETCQKRLMGNYNLPSLDATGKDVIIIGGGDTGVDCIGTSLRQNAKSITNFEVLGSPPKSRAATNPWPTWPRIFRVEYGHEEAALKYGSDPRVFSIMSKEFIGDEKGHVKGIRTVEINWVQDATGRWQMEEIANSEKVFKADLDPRSNFATEKNKFLTSVPRVYAAGDCHRGQSLIVTAISEGRQAARQIDLDLIGASSLAGPGGQIHSYLFKSKLDFRKRFLDLQFCLVYFSFLENVVTWKKFYQNLFPMFLSFALKLTRIPSHGR

Uniprot

Uniprot term	Description
Q9C102	Glutamate synthase [NADH] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=glt1 PE=1 SV=1
Q03460	Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1
Q0JKD0	Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0681900 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01645	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF14691	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan
PF00310	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF01493	GXGXG	GXGXG motif	Family	Interproscan
PF04898	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002932	Domain	Glutamate synthase domain	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR029055	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR028261	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR017932	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR012220	Family	Glutamate synthase, eukaryotic	Interproscan
IPR002489	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR036485	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR051394	Family	Glutamate Synthase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR006982	Domain	Glutamate synthase, central-N	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0010181	Molecular Function	FMN binding	Interproscan
GO:0016040	Molecular Function	glutamate synthase (NADH) activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan