Gene detail

Detailed information of pspe_0.1.m1.47477.m1 in Pachyseris speciosa

Genomic Location: Sc0000561:38065...58635
NR annotation: CAH3143632.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.47477.m1

ATGGACAGTGAGTTTCACAGAACGCTCACAGAAGAAGAAAGAGCTGAGATGCGCCAGTATAGACGGGAAGCAGTAAAATGCGAGGCTAGAATGTTTGAAAGGAGAAGAGAAAAGTACTCTGACCTAATCTTACAAGTCATGTCAGTAATGGACCGGATTCAGGAGCAAAGACAAGCAAAACATGGCGCTGAAAGTGTAAGAGAAAGAACTCTCACCAATGAAATTGGTGATGAAGAAGATCCTAGCAGAACACTACAGCAGACCACTCTACAAGATtcagtattacatgtatatgaaCCTGACTACAGAAGACAAGCTTGGGATATTCCTAGGAGTGGAAGAAACTCAACACAGGAACAGTTTACAAACTCCTTTCTCGATAGGACTGAAAATCATGGTGACCGATCAAGGAGAGTTAATAGCCAGTTAAGCTATTTACCAAATCCTATTGAATCAACACCTGCCATCACTGAAGAAAGTGGAATATTTAAACACCATTTCCCTAGACAGGAACGTTCTTTGAAAGCTGGAGGTGCACCTGTGGGATTTGAGGGACGGGATCTTCCTCTTAGCTCTACAATGGATAAGGATGTTCTTGAGGTAAAGAGGCCTTTATCACAACTTTCTGTTGTGTCAAATGGAATGTTTTCCGATAGTGCATCAGATATGACTATGACCAACAGACTCATGTCACATCAACAAGCCAGGAGAGGTCTGGATTATGATTCCCTTGCATCGACTTCATTGTCTGTGGCTTTTTCAGATTCTAGCAATGCAACAGTGTATTCAGTGATAGAAAAAGAACCAAGATCAACAACCCACCAACTGACTCACATGGAATCAGAAACCAGTGGTACACATCACACAACTCATCATGAACCTCAATCATTGACTTCTCAGTCGACAAATTCTCACACAAACACAAGGCCTGTGTCTGCAAAACCAAAGGCAGAAAGACAAAAACCGCAATCCTCTAATGTCTCAAAGGGTCCTTTGTTGTCAGATGAAGACAAGACACTAGCAAATTTGGAAAAACTTAGACAAAAGCTTCTTGAAGAGAAACAAAAGCACTTAGATTCTCTGAAGCAAAAAGAGCTGAAGCGACTTCGTAGGCAGTGGAAAGAGGAATTGGTGGAGTTAGATCACACTTATACATCTTCTCAAAGCAGTACTCCTACACACATAATTGAGAGACCTTGCTCTAGTTCCATGCCCTTAACaaggacttcagacttcagacggTCACCAGAAAATAATCATGTGATTGACAGGTCATCGCCTCTTCGCAGGCCTCTTTCAATGCCACCAGGTCAAATGTACTCCATACTTGAGCTCAGTGGGGAGAATCTTGATTTGGATACACTTGATCATAACACAGAACCTGAATCATCCTCTGATAAGGAGAATCATGTTGTAGATGACGATCTGAATGTGTATAGGAGTGATTCTGTGGCTGAAGGTGTTCTGCAAAATGTTACAGTGAAAATAAACACTGGACAAGGCACACATACTAGCTTTTCTCAAAGGAGTAGCTCCAAAACCTTTACAGCTCCAAGAGACGTTTTTAAGTTTATTGAGAGTGATGGAAGAGACAAATTTGCCAAGCTCTCTGCTCGTGCTAAGGGATTTCTAACAAGACGGTTGATGAAAACAGACAAGGTGCAAGGCTTAGTTAAGACAATTAAGGATACCAGAGATGTCCTGGAAGATATGTCAAAAGAGGACACCCAGAGCATGCAGGAGAAGATGCTGAAGGAGAATGTGGAGAGTCACCTCAAAGTAGCAAGAGGTAATCTTCACAATGTCTTCTTCACTATTCCTGTGAAAGAGAGAATGTCCTACATCGCTCACTCAAGAAGTTTAGCACAAGCAAAACATGCTAAGAGGGTCACCAGGAGTTCTGCTGGTCATTCAAAACTATCTGCTGTCACATTAAAAGCAATCCAGAGGCGACAGGAAGGTTTGGAAAAGGTGCTGAAGCCACAGCAAGGCCATTCTTCTCCACCCTTACCAGACAGAACAAGGTctaagaaacaaacaagcagaCCCATCACAGCTCCAGAGAGACCACTAAATTCCAGGGTGCATAAAGAGGATACAGTTAAGCGACCACAAACAGCAGAGCCTGCGCGTGGAAACCCTGAAAGACCAACAAGGGTGAGCTTAGGAGGTGGCAGTTCGAATCAAAAAGCCAAGAGACCACTGAGAAAAAGCCTTGGAGGAATACACCAACAGCCTAAGATGGTTGGAGCTTTGGCGAATGCAAACCGCACAGCTCAACCCAGAGCACAGAAACGATTGAGCTTACCAGAGACTGCTCAGCCAAGAATGAGAGGTCAGATTGGAGCAGGAGACGTGATACAAAGGCCGAAGACAGCTTCTGAGGTCAAGAGGAGTTCAGGAACGTTGGCTGCTAACTTTGCGAAATGA

Transcript

pspe_0.1.m1.47477.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43303	Centriolar coiled-coil protein of 110 kDa OS=Homo sapiens OX=9606 GN=CCP110 PE=1 SV=3
Q7TSH4	Centriolar coiled-coil protein of 110 kDa OS=Mus musculus OX=10090 GN=Ccp110 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006576 (this species only)

Pfam domain

No Pfam domain signature was detected for pspe_0.1.m1.47477.m1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033207 all species →	Family	Centriolar coiled-coil protein of 110kDa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13594 all species →	CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan
GO:0032053 all species →	Biological Process	ciliary basal body organization	Interproscan
GO:0032465 all species →	Biological Process	regulation of cytokinesis	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:1903723 all species →	Biological Process	negative regulation of centriole elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16453	CCP110, CEP110; centrosomal protein CEP110	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.