Detailed information of pspe_0.1.m1.47890.m1 in Pachyseris speciosa

Genomic Location: Sc0000570:553217...557728
NR annotation: KAJ7388766.1, hypothetical protein OS493_035877 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P27484Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1
P41824Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1
Q9VRN5Protein lin-28 homolog OS=Drosophila melanogaster OX=7227 GN=lin-28 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00313CSD'Cold-shock' DNA-binding domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011129DomainCold shock domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR002059DomainCold-shock protein, DNA-bindingInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR051373FamilyLin-28 homolog RNA-binding proteinInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46109PROTEIN LIN-28Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0031054Biological Processpre-miRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18754LIN28; protein lin-28-Messenger RNA biogenesisko03019deepkoala

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