Gene detail

Detailed information of pspe_0.1.m1.48124.m1 in Pachyseris speciosa

Genomic Location: Sc0000576:71338...77050
NR annotation: PFX18374.1, Transforming growth factor beta-2 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.48124.m1

ATGGCGCTCTTCTATTTTGTGCTTTTATCTCTGTCGTATTGCGGACTTGAATGGAATTCTCTCTTAGAATACTCAGGCAAAAACACCATCGTCGGTGTGTGCGCTCTTTCTAGACTGGATTTTGCCAGATCGAGTTGCTTTTTAGCAAGATTCCCAACAGCAGTTTATGCAAGGTCGAGAGCAAAGAGGTACTCAGGACAGAGAGTTGCTTACTATCGTAATACTTCGGCTACAACACAGTTTGAGTTGCTCAAACTGTCAGGCGATGTCCCTAATAATCCTGGACCGGTCAAAGGATCCAGTTATACAAGATCTCTATGTGCTGGATGCGAAAAAGCtctgaagaaaaataaaaatggcgTCCGTTGCAGTGGTTGTATCAACACTTATCACAGGAAGTGCACTGGCATGAATTTCAAGGAGTTGCGATCCTATTCTACGGCACAGTCTCCAACATGGTACTGCATTAGATGCTCTCTACCTCCACTTAGTGACagtttctttgaaaactctACTCTCGAAGaagaaaatcaagatgaagtAGAGTCGGAGTCAGTGGACGAGACCTGGTCGGACTTTGATCAAATTGCCAGGAATAATGTTTCAAACTTTAAGCTGGGACACATTAACGCTAACAGCATTGGCGGATTCAAATTTCATGAGATCAGATCTTGGCTTCTTTCTGGCAGATTCGACTTGCTGATTATATCAGAGAGCAAGATTGACGCGACTTTTCCGGATAGTATGTTTCATGTCGATGGTTTTCGATTGTGTCGTTGTGACAGAAAGGCAGGCGGCGGCGGTTTATTGGTGTATGTTAGGAGTGACATCTGCTTTATCCGAGTCAAGCAGATGAAAGGGCTCCCTTCCGAAAAGTGGTCAAGTTTTAAGACTGAATCTATCATTCTCAAGATTAAGCTTGGTAAAGCTTGGATCACTGTTTGTGGAATTTACCGGCCTCCGTCGATTCCGAAATCACAATGGTGTCATGAGCTATCATCGCTATTCGAGGCAGCATCAACACTGACGAGTAGAATATTGTTCGCGGGAGATTTTAATGCTGACGTTTCAGAACCGGATAAACCACCAAAAAACGGTAGAACTCTACTAGAtatgttagatatttttaaccTGCATTGCTTGATTACTGAGCCGACTCGAAAGTCCAGGACATCTCAAACTACTCTCGATTTAATTCTCACAAATAACAAGAGAAATATTGTTGCATCTGGCGTAGTGGATACGCACATCAGCGATCATTCGTTGGTTTATACAATCCTACGATCATCGGCACCAAGGGCTCGATCACGCAAGATTTGTTTTCGTAGTCTCAAAAATTTTAGCCAGGAGAACTTTGTGCGTGATATGCAAATTGTGCCTTTCCACATCATTGACGTGTTTGATGAACTTGATGATAAGGTTTACGCATTTGAACAATTGTTTCTAGATGTTATAAATAGGCACGCCCCCGTTAAACAAACAATGGTGCGAGGCAATCAGGTGCCATACATGACGGAACAATGGAGGAAAGCGATTAGACACCGCAATAAACTGTGGAAAATATTCACGCGCAATCGTACGGATGCAAATTACGAGGCGTACAAAACTCAACGTAACACCTGCACCTCTATCAGGCGAAAAGCGATAAAACAGCACTTtgtaaagaaatcaacagagcCTGATAACCCACGCGAGTTCTGGTCTACCTTCCGCCCTTTTTTGCATACTAAAAGTAGACAAGCCAATGGTATCACCTTAAAAGAAGAAGACAGGATTATTACTGACAAAAAGGAAATTGCCGAATTGTTCAATGAACATTTTGTTCACATAGCTGATAATGTACCTCTGAGAGAAGAAGAGGATTATGGCGAGGATTTTGTTAATCATCCGAACTTCATTAGCGCTTACAGGAAGTTTCATAGTTGTGAGACCTCACTGTTGAGGTTGACAGAAGACTGGAGGATGATGCGTGACAGAGGGGAGCTCGTTGCGGTGGTCTCTATGGATCTCTCCAAAGCGTTTGACatattagctcttgcaagctacactgaaattcgagagaaaataaagtttatgtatAGATGCCCGCAAAATCGTAACAGAGGGCGGAGGAAAGCATCCTTGTGGTTCAACATCCCTGTTATACCTGCCCGCGATAAGGGAGGGAGAGGCCTGCGTTCCGTTGAGACCGAGTACAAGGAGACGAAGGTTAAAGCCGCAGTCAAGTTGTATCAGAACAGAGATCCGGCCATGAAGATGGTGAGAGAGTTTGAGGAGCCCGCGGAGAGTAAAGGATACCAGTCAATGACGAAGGAAGCTGGAAAGTATGCAGAAGAGTACGGCCTGCAGTTACAGCTTAATCATCCTGACCCAGTCTGTGTCACCGAGGAAGGGGAAGTTGTATCCGGGGATAAGCTGAAGACTTCGAGAATCAAGAATGGAGTGGGTAGTTGA

Transcript

pspe_0.1.m1.48124.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan