Gene detail

Detailed information of pspe_0.1.m1.48553.m1 in Pachyseris speciosa

Genomic Location: Sc0000587:533576...547703
NR annotation: CAH3143376.1, unnamed protein product [Porites evermanni]
Species abbreviation PSPEC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.48553.m1

GTgggtttcaaaatggcggcaaccAAGAGAAAGTTCACTGTTCCTTCTGTTGAAGACTTAgatgaaaaaagacaagagATGAAAGTTAAACCATTGTTTAGTACGTACAGAACATCAACTGAAATTTTTCGGGAAACAGGAGATGATCCTTCCAGAACGATTGGTAACGCTGAAGATCTAAAGACATCTGAACATTCTCAAAAGACTGTCTTCAGTGGAACAACGCAGTCCAACCATGGAAAGGAGCTCGATAAAATCATGGCGAAGGATAATTGTGCTTCGAATAAAGATTCTTTGAGTATGAAAGATATGCAACCTGTGAACAGTCTCACAACTGCTAATTGCAGTTCTGGTACAGTGAAACCTTCAGTGGGGAAGAGCTTCAGAGaaacttttgcatttcttgAGGATACAAATCACTACAAAGAGACTGTTGCGAGGATTAAAGACAAAGAGTCAACATTAGATGTTAGAGTTCCTTCTGGATCAGTCAGCACTAAACCAAAAAGTAATGCCATTATTGTAAATCCAAGACagAAAGGAAACCCTGTGTTAAAGCATGTGAGGAATGTCCCTTGGGAAATGGGTGACATCATCCCAGACTACGTCCTTGGCGCAACAACCTGTGCTTTATTCCTAAGTTTAAGATACCATCATTTCAATCCAGAGTACATTCATGAGAGATTAAAGCAGCTTGGACAGAGATTTGAGTTAAGAATTCTCCTGGTTCAAGTTGATGTGAAAGACCCTCACCAGACACTGAGGGAGCTTGCTAAGATTGCAATCATGGCTGATTGTACTCTCATTCTTGCTTGGAGTACTGAAGAGGCAGCAAGATACCTTGAAACatacaaagtttatgaaaacaAACCGCCAGATGCCCTTCTAGGTCAAAGTGAAGGAGATTATGTCAATAAGtCCCTTGCAAAGATGGCAACCGCTTCAAAAGAAGATCTTGCCTTGCTGCCTGGATTTGGACCTCTCAAGGCTCAGAGACTACATGACCTAATTCAGCAGCCATTTGTTGCCAAAAGATCAAAAGAACAAGTAGAAGGAAACCAGCATTAGCAGGATTCATTCCATTTTACTTGCCTTTGCTATATGTTGCCTTCAATATTTGGAGTTGTGCAATCATTAGTGTGTGACAGTCACTGAGAAATCCTTCCAGTTGGAGTCTACAGATAGCAAAAAAATCTGTCGTCCTTCTTTGGAGCACTTCTAAACACCTTTATTTCCATCTTCTGAGTAAAGACTTCAACCCACGCAAGCATGAATATTGGTTTTCAGTGGAACTGAAATGCGAATACCAAACCGTTGATTTAACTCTTTTTATGTTCATCAAGTAGTTCCTCATCAACTACTTTCAGCTTACTTTTGCTTCGTTCTAAACACTATGGCAGTGAGGCTTTTTGTATAAAAGGTTTAGTGAATTTTCGTACCATGATATCAAGCAAAGCTGGATAATTTTTTAAGAGCTATAAATGTATACTGCACTGTGCACTGGCTACAGAGGACCTTTCTCTAAGTGTGAAGACCGAATGTATTTAAACTACGTATGATGGTTAGGTATTCCTCAAAAAGTAATAccttttgaaaaaaaacaaCCTCTGGCCAAGTGGATAGGAATGTATGAAAATGAACTAGATATCTATCACTGTAAATATGTAAGGTAATGGCATGCTGACTAAAAGTAAACGACTCTTTTTAcgtgctactccttgaagtccttgaaaagccctgggatttaattttagatttcaagggcgcctgaaaagcccttgaaaagaagaatttctgctgaacgtgcttgaaaataatgaaatttttGTTCGGATGGGAAGTAATATAAGATTATACGTACCAAAGTCGGTAAATTTATATTCCATTTTATATCTGGAAGagcttttttaaagttgctaTCGACcagtgaaaacatttcaaaacatagtacaagacaaaataaacttgctatgaacactccttgaaaacgttgttggtgcttgaatactccttgaattttATGTACACGAACCAACACGAACTGTGTTTTTATTGACTGACGATGATATTGGTGCACAGTTGTACAGTGTATTGAAACTGATAGTTTTTTCTGCTGACTTTTTCCTAGTTAAACatttaaacttgaacttgaacttacGTGATTTTAGAGGAAAGGCAAAATTGGGTGTCACTGAATGAAGGTGTGGGAGGTTTATGAGACGCCTTAATCGCCATAAAGTCGTTGCCCAGCCAGAGAAACTTTGACCAGAAATGCCAGATGGAGCCACAGAAAGTAAGGCGCTGGAACTTAGCAaacaaccaaaaccaaaatcaatgaAGATAACTAGTCATACGGCTGGTACTAGGTCTGTGGCAGGTTCCTCTGCTAACGTTTGCTTTACATATTCAAGGAGTCCGCCTATCTTTATTCTAAATATCTCTAAATGTCCTGAATTAATTCTTTTGGAAAATCCGAAAGATGAGAACCATTCCATTTCTATTCTGTCTACTTCCTCGGCGTCATTCAATTTTGAACGCAGTTTCTACAACGCTGAGACGGCACATGATGCATCTGTTTTACTTCTACTCGTTTCCAAGATGGACGTTGACTTGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07903	DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2
P07992	DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1
Q1LZ75	DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005657 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03834 all species →	Rad10	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047260 all species →	Domain	ERCC1-like, central domain	Interproscan
IPR004579 all species →	Family	ERCC1/RAD10/SWI10 family	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12749 all species →	EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000110 all species →	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006312 all species →	Biological Process	mitotic recombination	Interproscan
GO:0070522 all species →	Cellular Component	ERCC4-ERCC1 complex	Interproscan
GO:0070914 all species →	Biological Process	UV-damage excision repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10849	ERCC1; DNA excision repair protein ERCC-1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.