Gene detail

Detailed information of pspe_0.1.m1.49167.m1 in Pachyseris speciosa

Genomic Location: Sc0000602:542125...550988
NR annotation: CAH3028936.1, unnamed protein product [Porites evermanni]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.49167.m1

AAGCTAAAAATGTTCCATTGCCAAGTGATAAAGCAAATAACTAATTGTGCACTTGTGGCATTTGTTAGGAGTTCACTTGTTCGCAGTGCCAAGGAGAATTTATTGAACAATTAAGGACAGCACTGAAGAGAGAGAAGTGTGTTGATGTTGAAAGAGACCCTGCTGCTCATTTTGCGttACTTCAAAGAGGTTTGTTAGGTGGTCTGGCAGCAGCATCAGCTGAGGAAGGAAGGTCAAGAAGATCTCGCAGACCAAGAACAAGAATAAGTATTCGCACCAATCAGAGATCAGGGGAACGAGGGATTCTGCAAATGCTACTACTGCTGCAGCAATTGATGTGTACATCTAGTGAAGATGGTGCAGGTCCATCAGGCAACCTTACGTTTCCTTTTAATATTCTTCGTCTCCATGGAAACCCTGGTGATTATGCCTGGGGGACAGAAGGATTGGATTCAATTATTACACAGCTATTAAACCAGATGGAGGGAAGTGGTCCACCTCCTGCCGACTCTGAGGGAATAAAAACCCTTCCAAAAGTAATAGTGTCACAAGAATTAGTTGATGGTTGCACCGATTGTGCTATTTGCCAAGAAAAGTTCACATTAGGAGAAGAAGTTAGGCAATTACCTTGTAAACATTATTATCATTTTGACTGTGTAGAACCTTGGTTAAAAATGCATGACTCCTGTCCAGTATGCCGACTCAGCTTAAGTAGCACTCAGACCAGAGGGTCATGAGATCCATCCCCTTGATGCCATGGCAGACATGCTTGAATTGATTTGTGATAATCCAGCCTTAAAAATATTGGAACTCTGCAGGCCAAATATCTGTGTGCATCCACTGCTACAATGATAACTAAACATCAATGTTGGTTGGTGTGAAATATTGCCATTGTACGTTATTAGAAATCAATGTATCCTCTAGTAAAGCTCATTGGTTACTACCTTTGTAAttgaatgtaaataaaaaaacgttCACCGATTAGGATTATCTTTTAACATAGAACTGTGTAAATTGTATAATTTATATTTCACTTTTGATATTCGACCAGTATCCTGCGTATCCTGGCTGTTTTATTTTCCGTTCCAAATCTGAATTTTTGTAACCTCCCTAAATATTAAGAGATTACAAAATGCATTTTGACAGACTCTTGAGTCAAATTTTTTCTGTTAAAGTAGAAAATTGACTGTTCCTGCttttcagcatttttttttctcaagaaagggttactttgatttaaaaaaaaaacatgacaaGTCTGTTTTACTGCACTAATAAAAGATTGCAGAGCCTGTTACCAGTTTattctttctttttaatttccaaCTGTAGTTTATTTTTAACCAAAGGTCATGCCTTCCACCAAGGCAAAAGTTACCAGTCTCTTTTTGGTTGAATATGTCAAAAACCTGTGTTTTGCAGTCTGGAGAACTCTCATCCTCTTAGAAAATCAAGAAAGGCAGGGTAAAAAGTCACAATgggtatcaaatttttaccAGAGGGTAGTTAATAGGGACATCCTCAACATACCTTCCAAAAATCCAAACTGATGACATAAACCTGTTTAGAATCTGGTAAGCAGTACTTATGGTCAAGTTCATTCATGTCAAGCTTGAAGTGGCCGTCAgttttttaatgctcaaattgCAGATAGTGGGTGGCCAAAGAAAAGCCAATACACAACTTGAATTATCATTGTTAGAAGTTTAAAATGTACTTAAGTTAATTTGTAGTCAAGAACAGTGAGCAGTTGGTTTTATTTATAGGTAACAACACAAAAAGTTTGCATGCTGTTCTATATTGATGCCAACTTTTCTTAAGAAATTCACTGGCCATTGCAGTTGCTAAATTACCAGTGAACCTTTTCAGGCAATGAAATGATACAAGCAGATCTATGTCCAGCACAAGTTAAGctgctgttacacgttgaaacttttagcagaaacttgtgtgcaacggcactgcaaaacaagtttcagcagacgttgcaCCATGTAACGTGGTCGGTTTTGcgaaactttttcgaacttctGTTGCAAGACAAGTTTCATGTTAAGTAGAACcactttctacttctgcaacagtcgcaacgatcgcaatggtgataaaaacaagagtttcactgtgtaacaccacttcgtgaaactggtctcgctcggtcttgTCACGCTATGCTGCATAAGCCATAGAACTAGTTTTGCGGGAATTTCTAGACCAGTTTCAATGTTCCCGAACAAGTTTCAACCtttcatgttacacggtgcaatgcCTGCCGAAACATTCTCAttgccgttgcacacaagtttcagctaaaagtttcaacgtgtaaccgCAGTGTTACTGATGCATGTTGTAAACACAATATCGAGGTTTGCTTGCAGTTACAACTGTACCTATAAGGAACATTTACAGACTGTTCACAACATGAGGTTGCTTATTTATAAAAACTATATCAATTCAACATAGTGTAGTGTTATAAATTAATCCTGAGAATTGTCTAGAATTCTTATTTTAATAAGAGAAAGATATGGTTTGAGCAAGCTGTTATTGCAGACTGTATCCTTTGATATCAATGGTGTCAAAGTATTGCTGCGATAATTAATTTTTCCAGATTGCTCTTATGAGTCGGTACTCTTGATCTTGGCTTGCCTACGCTTTTGGCGCACCGTGATGAAGCTTGCAGGCGTTTTGTATCTAATATCAAGGAGTCTGGTTTCCTTTCACACCTGCTGCCACAATCCACGAATGTCGCTTATGGGTACGGGTTGAGGTCTGGTTTTCCTGTTCTGATTTCCGCATTGTCAGAATGGACCGCCTTAGTAGTTTTGTTACTCAGTTATAATAGGGTTTAATTGTTTCTGCCTTCTGTGTCAAGTGTTATGCTTTTTTGTGTAGAATTGACCTcccttgtaatttagtgttatacactaccaaagggtttaataaactgattattaCTTCTCCAACATAatcattaatattaattttgatcaGCATTAAAACAATTAATTACTACTTTCATTGTTAGGCAGTTAGCCCTTTACcttcaaagaaaattaaataaacttttaATAATTAAAGGTTTGGAGGCATGACAATGTTGTAGAATAATAATTCATTACTTCACTGCTTCAAAAGAGGTGTTCAGTAACaaaataatagacctttttagc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4L5	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2
Q6DIP3	E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1
Q91YL2	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001774 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15710 all species →	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.49167.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.