Gene detail

Detailed information of pspe_0.1.m1.51099.m1 in Pachyseris speciosa

Genomic Location: Sc0000657:297101...300124
NR annotation: PFX18374.1, Transforming growth factor beta-2 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.51099.m1

ATGAATTTCAAGGAGTTGCGATCCTATTCTACGGCACAGTCTCCAACATGGTACTGCATTAGATGCTCTCTACCTCCACTTAGTGACagtttctttgaaaactctACTCTCGAAGaagaaaatcaagatgaagtAGAGTCGGAGTCAGTGGACGAGACCTGGTCGGACTTTGATCAAATTGCCAGGAATAATGTTTCAAACTTTAAGCTGGGACACATTAACGCTAACAGCATTGGCGGATTCAAATTTCATGAGATCAGATCTTGGCTTCTTTCTGGCAGATTCGACTTGCTGATTATATCAGAGAGCAAGATTGACGCGACTTTTCCGGACAGTATGTTTCATGTCGATGGTTTTCGATTGTGTCGTTGTGACAGAAAGGCAGGCGGCGGCGGTTTATTGTTGTATGTTAGGAGTGACATCTGCTTTATCCGAGTCAAGCAGATAAAAGGGCTCCCTTCCGAAAAGTGGTCAAGTTTTAAGACTGAATCTATCGTTCTCAAGATTAAGCTTGGTAAAGCTTGGATCACTGTTTGTGGAATTTACCGGCCTCCGTCGATTCCGAAATCACAATGGTGTCATGAGCTATCATCGCTATTCGAGGCAGCATCAACACTGACGAGTAGAATATTGTTCGCGGGAGATTTTAATGCCGACGTTTCAGAACCGGATAAACCACCAAAAAACGGTAGAACTCTACTAGAtatgttagatatttttaaccTGCATTGCTTGATTACTGAGCCGACTCGAAAGTCCAGGACATCTCAAACTACTCTCGATTTAATTCTCACAAATAACAAGAGAAATATTGTTGCATCTGGCGTAGTGGATACGCACATCAGCGATCATTCGTTGGTTTATACAATCCTACGATCATCGGCACCAAGGGCTCGATCACGCAAGATTTGTTTTCGTAGTCTCAAAAATTTTAGCCAGGAGAACTTTGTGCGTGATATGCAAATTGTGCCTTTCCACATCATTGACGTGTTTGATGAACTTGATGATAAGGTTTACGCATTTGAACAATTGTTTCTAGATGTTATAAATAGGCACGCCCCCATTAAACAAACAATGGTGCGAGGCAATCAGGTGCCATACATGACGGAACAATGGAGGAAAGCGATTAGACACCGCAATAAACAGTGGAAAATATTCACGCGCAATCGTACGGATGCAAATTACGAGGCGTACAAAACTCAACGTAACACCTGCACCTCTCTCAGGCGAAAAGCGATAAAACAGCACTTtgtaaagaaatcaacagagcCTGATAACCCACGCGAGTTCTGGTCTACCTTCCGCCCTTTTTTGCATACTAAAAGTAGACAAGCCAATGGTATCATCTTAAAAGAAGAAGACAGGATTATTACTGACAAAAAGGAAATTGCCGAATTGTTCAATGAACATTTTGTTCACATCGCTGATAATGTAACTCTGAGAGAAGAAGAGGATTATGGCGAGGATTTTGTTAATCATCCGAGTATCAAAGCAATCTTTGAAAACAGGGGCGCAGACGAACTCGCTTGCTTCAGTTTTCATCGCACAAGTAAACCTCAGGTTGAAACCTTACTGAAAGAGATCAATGTGCACAAGTCGCCTGGTCACGATATGATCCCACAACGGCTGGTGAAAGACGCGGCAGTTGTTATTGCCGGGCCTCTTACAAGCATTTTTAACTATTCCATTGAAAATTCCTGTTATCCTGCAAATTGGAAGATGGGCACGGTGACTCCCTTATTCAAAAAGGACGACGAGCTTTGTAAGGTCAACTATAGGCCCGTAACTGTGCTCCCCGCTCTGAACAACATTTTCGAAAGGCTTCTGGCAGGGCAgatgtatgaattttatcttgaaATACTTTCAGACTTCATTAGCGCTTACAGGAAGTTTCATAGTTGTGAGACCTCACTGTTGAGGTTGACGGAAGACTGGAGGAGGATGCGTGACAGAGGGGAGCTCGTTGCGGTGGTCTCTATGGATCTCTCCAAAGCGTTTGACCTATGGAATACACTGCCTAACTCTATCCGTACAAGTGCATTTACTGATTTTAAGACGGAAATCCAGGGCCGTATCTTTGTGTAA

Transcript

pspe_0.1.m1.51099.m1

Protein

Uniprot

Uniprot term	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala