Gene detail

Detailed information of pspe_0.1.m1.51101.m1 in Pachyseris speciosa

Genomic Location: Sc0000657:350480...370342
NR annotation: XP_020627961.1, AP-4 complex accessory subunit Tepsin-like isoform X1 [Orbicella faveolata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.51101.m1

GGGCCTCGTTCCCGGATTCAAGACAATTTACATGAACCGATTTCCGGGCTATCCAGACACCGCTGCTCAGAAGGATATCCAAAATGGCGGGGCAAATGGCTGCAAACGCCATGGAGAGAGTTTCGGATACATTTTCGTTTGCAAAGAAGATTCCGATGCTTAAAAAGTACACCTCGGACGATGATATTCCAACCCCTGGTTACATTTATCAAGAAATTAACAGCATAACATATGAAACAATTAGTAGCTGCAACTCTCTTCTGGATTTTTTAGTTAACAGACTAAAAAAGCAATCTCCAAACATCAAATACAAGGTTCTAAAAATTCTCTGTTATCTAGCAAATAATGGCCATTCAGAGTTTAGAAGTGGTCTTCGGCACAAAGCAGATGCCATTAGAGAAGCTGAATGTTTTACTGGGCAGATGGATTATCTAAAAGGTGATGCTCTTAATCAGCGAGTGAGAGCAACTGCATCAGAGCTTATTGGACTTCTTTTCAATGTTGAGGGGAGTGGAACATCAACCATACATGCAATGATAGGGCCAACTGGCAAGAAAATGGAAGGCTTTGGAAATACACCTTCACAGCCAACAAGGAACAAAACATTGCTTGACTCAATGAAGGACTTTGTTGAGCGTCTCCCTGATGCAGCCAATATTTTGAAACctaaaaatgacaaagaaaatTTACCAACATCACTTGGATCAGGGATTGCATTTGTCAATTATACAGACTCATCTGATGCTAGATCAGATTTTAAGAAATTTCTGGATGCTGAAGACTGTTCAGAaTGCACCGCTTTAAACATTAATAAAGTGTTGGAAGCTCTGAATCAAAGGCTGTTGGAACCAGTCACTGAAGTGAGGCTGAAATCCTTGCATGTTTTAGAGGACTTCTTGAAAAGTGATATACCTGATGTGGCCTCTAAAATATCTCACTGCTGCACAAACCTACAAGAGATCACCAAGTCAGAGAGTGGCAGTGTGTTATCCAAAGCTGAAAAGATTCTGTCAATACTGAAAGCTAGAATAGAGAAAGAAAAAATCCAACAAGAGGAAAGTGTGAATGACTCTGAGAAATCAAGAATAACACACAGCCAAGCACTTCTCAAGTTAGGAAGTGCAACCACGACTCGAGATTTTCCTTCACCGCACTTTGCAGTTGGCAACACTTCAACGTTGTTTTCAGGAATGAGTTTACACACGAAACAAAGCTCATCAAGATCACACCGGTTTCAATCATGCACTGCTGTTCAGGGAAGTCAACATCCAACAGACGTTCTCGATGTTTTGCAAGGACGTGATCTTTCCAGTGGAAATCGCCTGCTTGATAATGACGAGCCTGCACAAAAATTGTTTCAAGATTCCAAATCGGATTTGAATGAAGTTTTCGGCGTGGCTCGTAAAATTGCAACTCCTAGCTCTGTCGCAAGGAACCAACAACCCATAGAAGACAGTGTGACAAATTTATTTGATCCTTTGTGCAGCGTGGAAGCAATTTTTGCTGGTGAACGTGTCACGCCATCGGGCGTGACCCCAAATACTGCACTGGAAAAGAAAAGTTCTGATAAAAAGACCACGACTGGCCAATATTTGCTGCAGCAAATACGTTCCGAAGACAGTTTAATAACAACTCCGCTCAATTCTTCAAATGCTGTCACTGGTTACCCTGTAAATGCAGGATTTACAGGTTCTATCCAAGGACCAGCGAACTCTGCAATCGGCTTCTCCAGTTTTAGTGATTTGAATGGTATGTCACGCAACAGATCAACGGAACCCGCTGTCACGCTGCCTGGAAATATGTTGTTAGTGACAAATCCTTATGGCGCTAATATTCCTGGTACTTTACGCCCAATAGTTCAACCGTCTGTTTTAAGTGGTGGCTCTACGATTCCCTTAAGGCTTCCACCGCCAAGTCAACGAACGGAGTTTGGTTTTGTTGGTAAATCCGGAAAAGCAGATGCCTTCAGTTTTGTCCAAGACGAAATGAAGACAAGAAGtagaaaataattaacaattattctacgaaaTTACTCggatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3V8Y7	AP-4 complex accessory subunit Tepsin OS=Rattus norvegicus OX=10116 GN=Tepsin PE=1 SV=1
Q4V832	AP-4 complex accessory subunit tepsin OS=Xenopus laevis OX=8355 GN=tepsin PE=2 SV=2
Q3U3N6	AP-4 complex accessory subunit Tepsin OS=Mus musculus OX=10090 GN=Tepsin PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01417 all species →	ENTH	ENTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR035802 all species →	Domain	Tepsin, ENTH/VHS domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013809 all species →	Domain	ENTH domain	Interproscan
IPR039273 all species →	Family	AP-4 complex accessory subunit Tepsin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21514 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.51101.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.