Gene detail

Detailed information of pspe_0.1.m1.51352.m1 in Pachyseris speciosa

Genomic Location: Sc0000665:143630...160571
NR annotation: CAH3036252.1, unnamed protein product [Porites lobata]
Species abbreviation PSPEC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.51352.m1

GCGCAATAGACCAACGCGGGAAacccaaaatggcggacgacaaCAACTGGGATTTTATACATTTCACGTCGTCTGTGTTTAAGAGATAATTCCAAATAGAATGAGTCAGGGAAAGAGGATTCTGCGGGCATTATCTCGGATAGGCTATCCGAAAGCGGATGAGTTTGAAGGGGATAATTTCGAATGGTTATTCGACTACGAATCGCTCGTTCCTTTCCTGGAGTGGTTTTGTGAAAACATTCATGAAACGAATGTGCTGTCACCAGAGGATTTAAAGAGATTTGACGACCTTTGCTCATCAGGAGCTTCCATTCTTGAAAATGACCAAGTTGACAAGACTCTGTCAATGTTGATGCACGAAGAAGAACAGTTCTCCAGTGAAACCTTGAGAAGTGAGATTGGTACACTGGAAAAGGAGGTGCAACTGATGCAGCAGAGACTACAGAAGATTGTCTCACAGAGGAATCAATTAAGcCTCCATCATGCAGGTCTGACTCACAAACTTTCAAAATTGAGTTCAGtggttcaagaaaacaaacaaaaatataaaGCCAGTTTAGAGTCCTGCCAGGCCGATAATGCTCAGATGAACTCTGCCTTAGAGAGTTTGGAGCACTCTGTTTCTGAAATGGTAGCATTATATACGGGACAAGAAGGCTCGGCTATTCCTGCATCATTTTTGTCTCAACTGGACTGTGACAGTTACTATGCATCGGAAGAACGGTTCACAGGAGACCTGACTGCTTACACAAGGAAACAGTTTTTTGAGGGAATTGCGGAGATGGCTGGAGGAGAAGAGAAGTCAAGATATGAATTATTGGAAATTAGTGATCCAGCAACACTGTTAGTAAGAGGCGAAAACAATGAAGTGAATCTGAATGACTGTCAAGAGCTCAGAAGACTACAGTCTGTTTATGCTTCGAGTGAAAGTCAAAGAATTCATAATGTGGCTGCAGCGAAGGGAGTAACAACAGCACTCAAAGCAGCTGAAGAAAAATTGAAAGGATTGTCATGGGAGACTAATCCTCCAGGAACTGAAAACCTAAGTGCCAAACTGCTTGAAGTTCAAAAGGCACTCTCACAAGTAAAGATGGAGATAGGGGAACTCACTGAACAGGTGCTGCCTGAACTAGTCCAGGAGCTGGGAGAGCTACAAGCTACGAGTATCCTGAAGGGGGACTATGATCTGAAGATAGCAAGACAGGACTACTTCACTTCCAAACAGGACCAGgTGATCACCCAGCTTCTGCTTCAGCGATCTCGTCACGAGTTTCTCTCCATGGCTCTTGAGGTCGAAGGCCGCAAAAATCGCGACACTCATCGTTTGTTCAGCACTCTGGAGAGTGCACTGGGGGACTCAACTGTCATGGAAGACCATGCTTCTCAACCTCCCCACCCTACACGGGGAACTATTGATAGCAGAGACCACTTCATAGAAAGACTGTACCGTATTCTTGAAAGCCCACCCGAGGGGGAGGTAGACAAGACAAAGGAGATTTTCTTGGCTTTCAGTCAACTGGTGGAGTGGAGCCAGAAGTTGGCAGGACAGCTGGAGTCTTTCACTATGTCCCTGTCCTCCTCGGGCAGCAGACAGGAGGAGGCATGGAAACAACTGGAACATAACCTTCAAAAATGTGCGAAAACAGTTTATGGAGAATCTGCTACGACTGGAGGTCTGCCACAGCTGAGTCCTCAGCGCATAGCAGATGGCCTGAGACAGTTAGACGAGCTCCTTGTTACTCTAGAACAGTCCATCAAGGACATCATTAAAGACTGCGAGGCAAAGAAAAAGGTCCTCCGCTCGGACAGCTTGAAAGTGATGGAAAGAGAACTcttcatatatttttttacggATCCTCCTCGCTTGAAGCGAGCCATCGCTGAGTTAGCTGCTCGGGTTGATGCACATATTGTGTCATTAAAATGACGGGTGTAACTACAATGCAAAGTGAACTCCATAAACGGATTCTGCGACTGAGGTGCAACCCCCATTGAGTGACACAGAACCATAGGACTCATAGTGACCTCCTTCGTAAACTTGCACACTGGCTCTGTCGCTGTCCGACTTTGAGAGATGTTGGTTGTCGAAGCATGTGATACGTTGACAAGATTGTAGGACAGCCCATGTCCTGCTTAGAAAGGTTTCCGTCTTAGAGAGGGATAAAGTACACTGCACAGGAACCCCAGTCCGTGGATCCGGCTTATGAAAGTTAACGAAGGGACCAGCTGTTCCTTTTCAAGATGAACTGAATCGAATAATTATGTAACATGCCAACAACTTCTTCTGTCCGTGTGAGAGGGAGATGAAAACAAGATTGAAGTATGTTAGTGATCAATGTAACATGACCATGCAATTACGACGATCATCACGGTGCAATTTGAGTAGACTTATGTCTCAAACAAAATGGAGTAAAGGACTGAGGAACGAAAAGAAAAACCTCAAACGTCCATTTTGTGTagtgaaagaaaaaatactCGTACGCTTCACGTCTTTCCTTTTATGTGCTTCTCTGTTGCCCCCTTTGGCAACGAAACTGAGAATCAGAGTACCTCTAATCTGTGACTCACATGGCATGCAAACGTGCTACTTTTGTTGACGTTATTTTCAAGATACCAGTAGTTTCTAGTGCGTAGCTCTGCCCTAAGTGACCAAGTAGTAGTGTATCTTGTTTGACTCGATGTTCGTGGTGCGATTTTGTTGTATCTTCAAAGAAGCAAGCTCGTGGTGTTAAATTAAGCTACTTCACCCTCGCTTGTCGTGTACACATTTTCGGTTATTAAAACAAGACTTTCAGTTTGCAGTTttactaataatgataataataataataataataatcagtttattgaaccctttggtagtgtataacactaaattac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68CZ6	HAUS augmin-like complex subunit 3 OS=Homo sapiens OX=9606 GN=HAUS3 PE=1 SV=1
Q8QZX2	HAUS augmin-like complex subunit 3 OS=Mus musculus OX=10090 GN=Haus3 PE=1 SV=1
Q6DCY9	HAUS augmin-like complex subunit 3 OS=Xenopus laevis OX=8355 GN=haus3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005303 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14932 all species →	HAUS-augmin3	HAUS augmin-like complex subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032733 all species →	Domain	HAUS augmin-like complex subunit 3, N-terminal	Interproscan
IPR026206 all species →	Family	HAUS augmin-like complex subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19378 all species →	GOLGIN- RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0070652 all species →	Cellular Component	HAUS complex	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16586	HAUS3, AUG3; HAUS augmin-like complex subunit 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.