Gene detail

Detailed information of pspe_0.1.m1.51465.m1 in Pachyseris speciosa

Genomic Location: Sc0000668:307057...319216
NR annotation: XP_015768173.1, PREDICTED: Y-box-binding protein 2-B-like [Acropora digitifera]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P21573	Y-box-binding protein 1 OS=Xenopus laevis OX=8355 GN=ybx1 PE=2 SV=1
B5DE31	Y-box-binding protein 1 OS=Danio rerio OX=7955 GN=ybx1 PE=1 SV=1
Q9JKB3	Y-box-binding protein 3 OS=Mus musculus OX=10090 GN=Ybx3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011129	Domain	Cold shock domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09276	YBX1, NSEP1; Y-box-binding protein 1	-	Spliceosome	ko03041	deepkoala