Gene detail

Detailed information of pspe_0.1.m1.51476.m1 in Pachyseris speciosa

Genomic Location: Sc0000668:444008...449072
NR annotation: CAH3038068.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.51476.m1

TGTAAGTTAAAAATCCAAAGCTTGAAATATTGTTTTGGGTGAAGTCAAGCGGGCAGTAATGACAAGCATGCATTTCAATGAAGCATATTGCTGTGAATTCCTTTCGCATTAATTGGCACACCCAGCTTCACGAAAACAACCGAGAAACTCCGAAACAACGTAGTTGGGTTGAAAATCTCGCCAAACCATGATCAAAGTCGTATCAAGCTTTGTAAGCGGTTTAGCGGCTATTCTTCTGGGGATTTTGGCCATAGCAACTGATTTTTGGCGAGTCTGGTGGAAGGAAGCCAAAGAAATCTCGGGAGTACAGTTTCATCACGAAGGACTGTTTCGTACTTGTTCAGAAACTACCATCAACAATACTGTAGTTGCAGCAGACAGATGTACAGACTTGCATACTTTAGGAAGACCAGATTGGAATGGTGTGACAATTGCCTTCATGGTTCTGGGTCTCTTGCTACATCTGGCTGCATTCTGCTTTGCTATTGTGGCTGCATGTCGAAAAGGCCATCCATTTCCGTCATTCTGGGTTGCAGGTCTCTTCCTTTTTGCAgCAATCATGGTCATTATTGCCCTCCTGGTCTATACATTCCATAACTGGCAGAGTGATGTGTTCTTTAGTTGGTCATATGGTGGCGGATGGTCTACAGTTGCCTTATCTATTATAGCACTGGTGTTAATAATGGCGGATCGCTGAGAATTATGTGGAGCCCAGCTGACACAGAAGCCTCCCTGTGAAAAAAGCGAATTTTCAACAAACAGACATGTTGTTTGTGTTAAGGATGTCAAGTAGTAGGTTGTAGGGATGATAGTGATGTTTAAGTCATGACCCTATTGTCAGTGGGCTCCATAAACTCAGTTCTTTAAACTAGTCTTGGCAATGCCAACATTAGAAACAAAAAAGcttttttcttaaatttgtCACCTGTCTAAACCATTACAAAAAATGGTTGCTGGCTTTTAAGCTAAAACTGATAAGTAATCAACATTCATTTTCTCCTATACCTTTTGGGTCTTCTCTAAGTGGCCATTGCTATGGCAATGGGcagcttaaaggggcagtgtcacgctattttaccatcactttaaaaagcttaaaactgtctatgcatcagtggaaaccttaaaataatggtctagttttgttgccaaagactgtagtactgcattcaCATCATAAACTtgtgtattccatgtaagatgacgaggatggaaatggattgaaatttgaaaaaacttgccagttttttcaaaatttcaagctatgcattgaaaaatcaccaaaaaaaataattatggttagctcttcctgctaaaatttcattgtaattcatcttgctgattctgtaggaacattttttgcacgataacaggtaaaaggcagtaattttggcagaattgaaccaaaaaaagcaaaaatctcggtgacagtgctcctttaactgAAAGGCTCTTGAACAGAAATGTTTACCCAAAATAttattgaattaaattatgatCAACTTGAACTACATTCCATGGAAGAGTCCATAGCCATCCTTTGGCAGGTCACTGTAAAATCGTGGGTGAAAAGGTCTCAAAAGTCATTGTGGTAAGGGAATATGTGCAGTAGTTTTattggggaggaggtgaaatacaacTCCCCTAAAAACAACTGCATGGAAGGCTAGCAGTTGAGAAGCTTTTCTGGAAAAACACTATCAACTGTATACTAGGTCAAAAGTTTAGGAAATGGCTGAAGGGTGGAATTTTTTTGTATGATTTCAGCCTTCTTTTCAGAATGGATATCTGGTTACTAGAAATGAGAATTTGATTGTTGACATTACAGTTTACTTTCCTGTGccaatatttttattgttcttAGCACAGTTATAATTATTCCACTTTCATTTTTTGGTTGCTAAGACTGTCTTGTAGCATGTGCAAAAATAGCTACCAGCAGGGGTGACTTATTGTGTACATAACAAGGAAGTACAGATATTTGATGTAAAGTGTATTTTCAccacagtgttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13903	Claudin_2	PMP-22/EMP/MP20/Claudin tight junction	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050579	Family	Peripheral Myelin Protein 22/Epithelial Membrane Protein	Interproscan
IPR004031	Family	PMP-22/EMP/MP20/Claudin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10671	EPITHELIAL MEMBRANE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26255	EMP1; epithelial membrane protein 1	-	Focal adhesion	ko04510	deepkoala