Gene detail

Detailed information of pspe_0.1.m1.51624.m1 in Pachyseris speciosa

Genomic Location: Sc0000673:101154...105126
NR annotation: CAH3024653.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.51624.m1

ATGGCGGCGAATTTTATTGCTTGCCCGCGAGCTAAGGATAAACAAGGTCGTTTTTGTAAGAAAAAAAGGCTGAATAGATTTACAATTAAATCGAAAGTCTTGAAAGAGAAGTGCTCCGCGTATAGAAACCTGAATGTGGTTTGTCCTGAGAAAAAGACTGATTTTAGCAAGACATTTTCATCTCCGGGAAGACGAGTTGTGGAGTTGGGAGTCCTTGCGAGGACCCTTAATGAAGGATGTAAAACCTGTAAAACGCCTCTTAGGCCTTCCGACTGCACAAATGAGGCAATCTCTGGCTTGGGATCCTACCTGTACATAGTGTGCCAAAATTCAGCAGGTGGAGAAATTAATCAGTGCATCACCAACAAATCTCATCGTGTTGCCGGTACTACGCGCGGCCGCAAAGTGTTTGATGTGAATACGAAACTCGCAGCAGGAATGCTTCATGCGGGAATGGGTCCCACTCACGTGAACGCACTGTTGTCATCAGTAAATCTACCAGTCATTGGAGATAATGCACTGAAAGCTAGAGAACATGAAGTCGGCCCAGCAATCGAAACAGTTACAAAATCATCGTGTTTAGCTGGTGTTGAGGAAGAGAAAAAGAGGTGGGACGTAGAAGGGATGGGTCAAGATGGAAAAGTACCGATTGGGGCGTCATACGACATGGGTTGGCAGAAGAGGGGCAAAGGCCACAACAGCTTGACGGGGACTGGAACCATGATCGGTGTAAAATCTGGAAAAGTGATTGGGTATGGAACAAGAACAAAAAGATGTGCAACCTGCGAAGCTGCAGACAGGAAAGCCAAAAAACCAAGAGTGCATGACTGTAGACTCAACTGGAATGGATCATCCAAGGGCATGGAGGCTGATGTCTGTGCAGAGCTTGCTCAGACATGCTGCAAGAAACATGACACTCAAGTGGTCATTTTAGTTGGAGATGACGATTCATCAACTATTAGTAAAGTGAGAGGCACAGTTCAACACGACGTACTAAAATGGTCAGATTTAAACCATGCTAAAAAGTCTTTGGGTAATGCACTGTACAGCCTTCAGGGTCAAAATAAGGGTAACAAAAACATCACAAACAAAGTTATAGAGTATTTCCAACGTTCCTTCAGCTATGCATTAAAGCAGAACAAGGAAAAGCGAGAAGGAGTGAAGAAAAGCCTAAGAGCCATAGTGCCGCATGCCTTTGGTGACCATAGCCATTGCAGTGAGACATGGTGTGGCTACTTGAAAGATCCCTCCCACTACACCCACAATTCCCTCCCAGATGGTAGGGACCTTCGAGTGAACCAGAAGAATATTGGCCATTCTTATGTTGCAGAGGCACTTCAGAAAATCAGCCTATCGCCTGGGACATACTGTGAAAAACGTTCCCAAAAACTGGACAGAACGATCTCGAACCTCAAAGTGAGAGAAAGCACTAaagaatttaaacaaaaaaggaGAGCCAGGAAAGAACAAAGATCATCCAAGACTCAACAGCTAGAGATGAGAGAGGGACCAAAGTATGAAACTGGTTTGGGGTATACCAATGACAGTGACATTGAAGAAATACCTCCATCTTCAAATCCACGAAACAAGGAGATGGTTTCTTCATCAGATATCAATTCCAAAATTGTGTTTGATTTGGAAACATCATCACGAGGAGACAATGCTGAAATACTACAAATTGCTGCAACTGATGGCAAGAATGAGTTCAATGCATATGTAGTGCCGCAGTATGGAATTTTACCAGCAGCAGCATCAGCTGTTAACAAACTCACATTTGTACATGGAACACTGTTTTATAATGGACGCCCAGTAACTGCAGTCAAGATAGCAGATGCCATCAGAGATTTGATTGTTTGGTTGACTCCTAAGAAACCATGCTTACTGATAGCCCACAATGCAAAGTCGTTTGATGCGAAACATCTCATACGAGCTGTAGAATCAAACAACCTGTCTGATGATTTCCAGAAAGTTGTATTGGGGTTTTCAGACACTCTTCTAGCCTTTCAAGAGCTTCTTCCTGAGCGAAAGTCACACAGTCAGCCAAATGTAGCCACAGACTTGATGTCCAGTAGTTACAATGCTCATAATGCCTTGGCAGATGTTCAAGTACTCCATCAGGTGACCACAAAATTCTTGAACACCAAACTTCTAATAAAATACAGTTTCACAGTGTCCTGA

Transcript

pspe_0.1.m1.51624.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929	RNase_T	Exonuclease	Family	Interproscan
PF20700	Mutator	Mutator-like transposase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR040393	Family	Three-prime repair exonuclease 1/2	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR049012	Domain	Mutator-like transposase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000738	Biological Process	obsolete DNA catabolic process, exonucleolytic	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan