Gene detail

Detailed information of pspe_0.1.m1.51908.m1 in Pachyseris speciosa

Genomic Location: Sc0000681:142334...156014
NR annotation: CAH3046852.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.51908.m1

CTTCACCGGTCTGCACACACGAAAACCACTCGTGTCACTCACGCATTGCCTTGTGGGTACAACTTTTTCCAAATGGCGACTTTCTTGGCCGTTtgatcaaatttttcttttggcgtttttctttaaaatatgACATGTACAAGTCATTATACGATTACGCTGGGAGAGATAATGGAACTTTGCCTGTGCGTGCAGGAGAGCAGTTTCATTTTCTCAAACGTTATGACGAAAACTGGTGGGAAATGCGATCTCAAAACGGTGCAGTTGGTCTTGTTCCTGCATGTTATATGGAAGCTGTTGACGACCAAACGTTTGATCCAAATGATTCCAAATCAGTGCTTGAGTCTATAGATAAAGCCATTGAAGTCATCCATGCGCATGCAGCTAACAGTGGAGGTTCCTACACACATGAACAGAGAACTAACTTGAGAAAATTACTAGAACATAGAAGTCGTCTTCTTTCTGGAAAGACGTCTGCTGGTAAAACATCAGGTTCATCTGACTCCCATGATGTTGGAATGAAAAGTAAACCATTGGAAACAGAGCCACCTGCGCAACCTCGCCGTCCTGCACCTGCCTTGCCACCTCAAAAGGACAAGAAGGAAATTAAGAATGAGTCAACAAAGAGGCGACCAGCTCCTGCAGCACCAGCACATTCTGCAGCTCCTGCAGCTTCTCCTGCAGCTTCTGCAGTACCTGAAGCCCCTGTTTCTGCTGTGAAACAAGCTACTGAGACACAAGGTGAGACTTCTCATGTTGAACGTCATCATACCCCATCTCCACCTGCTGTTCCTAAAAGAACTGACCTTGAGCCTGTTAAAGTACGCTCTGGGCTTGCTGCCGAGTTATTGGAACTACTGCGAATCAATACAGGTTTGAGTTACGACAAGTCCTATATTGCAGTACATACACTGGTGTCACACATACATGATTCCATTCCATCAACGTCAGATGCTATGGTACAGATTTTACAAGATCTGTTGCATCAAAAGGAGTCTCGCAGTGAAGATGAAGAAGCTTTGCTTCAATCTCATGATGGCCAGGAGCTGATAAGAATTCTTGACGATTTAACAGAACACAAGGAAGATTCACAGCAAAGAACCTGGGCAGTGCATGAAGATGAGGGAATTCTTCACAAGCTGCTCAAAGATTTGCTCACTCTTTTGcTGGATGCTGATCCTGCAGTTTGCCGAGCAGTTCTAAGACAGGATGACTATGAATATGTCAACATGCTTGTTGTGTACTTTCAAATGGAAGAGAGGCGCACCCTACGTCAACAGCTTGTTGAGATTTTTGGCTGTATGTGCGGCTTAGAGAAGGAGTTACTGTCCCAGCTGTTGTGTTCTGTCCTACCTACAGAACTGGCCATAGACATCATGAACAGGAAAAGTGATGTTGTGATGCAGTGTCACTGTGCTCTTTTGTTGACCATGATATTTTCCACTGGGGAATCAGTTCCGTTTACTGTCTATGaCCAGATCAATCATTCATTTGTGGATTTTGTTGTTGATGCCATTGAGAGTGCAGGGGATGATGACAAAGGTGAACAGCTGATGGATACATTTGTTCCTCTACTCCTTGCATTCAACCAACACTTTGTAGaTTTTCAGAGTAATATTGTGATGAGGGTGTTAGCTTCCCGCCGTGTATCCAAAGTTCTGAGTGAGAAAATCATGTTACTTATCAATAGAGAAGAGGACCCCACTGCAATGTTTCAGTATCCCAAAGCATGCCCTGACTCTGTGCTGAAGTTCCTCACGGACATCTTTTCTTCTCCGGACACGTCAGACTTTTTTTACACCTCAGACATGATGATACTGATAGAGATTGTTCTGCGGCAGTTGACTGATCTTTCCCCAGGGACAGGGATGAGGACTGAATATATATCATTACTGCACCAAATCTTGCTGAATTCCAATTACAGCGAGCGCAAACATCAAGCAAGTGATTTATTGGTTTGTCTTAAAAGAATCAGCGAGGAGGAAGATGAGGAGAGTGAAAAAGACAAACTTATTGTGCAAGAAATACTCAAAAACTCtgcaaaatatttttaatactGTACTTCTCTTTGTTAGTCATGCAGATGGATGGTTTAacttttaaagtgcctatgaagtaaaaaaatctTATTCTAATATGATAGCTTATCATTAATTTCTGATTCTTAACAAAGAGGTTTTAagcagtaaaacattcacaacgcgGAATAAGTCAAACTGAAAGTTCCATCTTGTGCGTGGCCAAATGATCATATTACAAAGCTGTGATGTACAtgtaggaaatgcttcagaagacatGAGTGTCATGGCATTTCTTACATCATCACCATTGTTCTGATCAAAGATTTGTTCCCAGTCCATgggacacgatttagtgaattttgaggttctttggagggCAAAAAATTCAGCTTTAGCTgattttgtcaaatttattttgtcattttgtaATCATGACACACCAAgcttcaaaatttgaaaaagcaattttttttacttcataggcactttaataatGAAATGAAAGACTATAGGTAGCCGCTCTTCTCCTGTTCATCATTCTCATCTCCTTGTTGGTAGTGATTTTCATGTTATGCCTAATCTACTACTTACTATCTATAAAAAGTTAGAAGCTACCTAGTCTAAAGATCCTAgtttaagataaaaaaaaatctggaaacaaaacagaagccaaaaaaagcaaaacaagagagagagagagagaaaaaacaaaattggaAAAGCATGTTCAATAGTTTTTGCTGTTTACAATCTCATGCTCCCAATATGAATAAAGTAAATTTATTTATGGTCAAACATCTTCCAACTGTAACAAATAATTTATGACACCATCAAATGTGGGTGACATTAATATGGTGAAACACCCACCATCTATCTGTACAAAGTGGTCAATGTGGCAAATAACAGAGAAGGTCCATATTAATGAAATCCTTATCTATGTtaatatattaatttttaataaagTATAACTTGCAAGAAAATTTCAAGACCATGGGTGCTTTTCATTGAACAAACATCACTGGTACAAATTTTTGGAATTTTCTCTGATTGAATGGAATGCTTCCAACCACGTCCCAGAATTCGAGGTCACATGTATTGACATGTTGGAGGTGCTTTGTCCACTGTTATTGTTCGCTTCTTCACGTGAGCTTACGTTCGGTATGAATGGAATATGAAAATTTCAATAATCCTGGAAAACTTTTTCTGGAACttgcccgttccattcaatttcaaactgaaaatctcgaaaattttggttgaatggaaagcgccccataTTTCTGGCTGGTGCATCATATACCACacaacaatggagaaacaatgaACCAAacatgaaagaaaacaacagacTAACAATGGAGTTGGTACATGGTAGAACAGCCATATTTTGTAAGTGCTTTTCACAAACAGTATCTAGGGCTTTTTACAAAGACATGCATAAGTTTGGAGACTGTGAAGTCCATCTGGGGAcagtaatatttttattattgattAGCAAAGGTAAGCTAGTCAGAGATTATTTTAAATGTTaacttttatttaaacaatttaCAGTATCTTCCCTGACGaaatttcacttttttcttaaagtgcaaGTTAAAGTTTGACATTGCAGTAGTTTTAGCTGCAAATTTGCTCTTTCAGTTTTTTCTTCAATAAAATACATTTTTCTTGGTAGAGTTGACTGACACGATTTTCAAGAGTCTGGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ESJ4	NCK-interacting protein with SH3 domain OS=Mus musculus OX=10090 GN=Nckipsd PE=1 SV=2
Q9NZQ3	NCK-interacting protein with SH3 domain OS=Homo sapiens OX=9606 GN=NCKIPSD PE=1 SV=1
Q12342	Protein LDB17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LDB17 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005850 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF09431 all species →	SPIN90_LRD	SPIN90/Ldb17, leucine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR030125 all species →	Family	SPIN90/Ldb17	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR018556 all species →	Domain	SPIN90/Ldb17, leucine-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13357 all species →	SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0071933 all species →	Molecular Function	Arp2/3 complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.51908.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.