Gene detail

Detailed information of pspe_0.1.m1.52500.m1 in Pachyseris speciosa

Genomic Location: Sc0000699:20899...29558
NR annotation: KXJ09287.1, putative enzymatic polyprotein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.52500.m1

ATGGGTGAAACGGGCACtgatttttctcaatcaaacaTCGCTAGTCCTGCGATCGGTCAAGAGAGCGGCCTTTCAGGCGAGGAAACGGTGGGACTAATTTCCCGTCTCCTGGATTCAAAGCTGGATGAGAAATTCGCCGATTTTAAGCATGCTCTCGAGCAGAAGGAGCTTTCGACAAACTCTCAAATCAAGAAGTTGAAGACTGAAGCGAAGGCTTCCAGTAGTTTCCAGTTTAAAGGTAACAAGCTACAGTTTGAGTTTAATTCGAGCTTGTTAGACTCTATAAACATTGCTTTCGATCACCTCCACGAGGGAGACTTGTCAGGTGGCAACAAGGAGCTTGACAACGTCAAAGCGTCACTGAACAAGCGAAACAAAGTTATACATTTTGCAGACAAGAGTCCCGCTGGTTGGGCGGCAGTAGAAGAGTATGAATCTGACGAATTGGCCGACGATTCGGAGGATGAGAAGAAACTGCGACCTGCCGAAAGAAGGGCGCTCGCCAAGATTCGCCTGCGTAAACAGTCTCGAGGTTCTGGTCAGACCCGTAATTTTCAGCAGGACTGTGATGGCTCTCTGGGCGCCCGAGCCGCGCCTACGGCAACAGGGCCTTGCCAGCTACCTCAACCACTACCGTTAACAAATAAAGGAACTCTAGAAAGACTTGGAACAGATGAGTATCGTAATGTTGTAGATCCGTTTAGTAGTTTTGTTGGAATTGAAGAAACAGATTTATTAGAACGCAGTTACGTAGATTATTTTGAGGGTTCTGAATCAGTTATCGTGAAGGGGAGGTTGAGAGCTAATGTTCAGTTTTGGGAAAGCTTTGGTGCTTCTCATTTTGTTCTTAGCGTTATTAGGGAAGGGTATAAAATTCCCTTTTACTATACTCCTACGTCAGTTTTTCTTCCGAATAATAAGTCTGCTCTGCATAATGCCGATTTCGTTTTAGGCGCTATCACTGAACTTCTTAAGGTCGGTTCGGTCGTGCAGTGTCCCTGTCCGCCAGTAGTTGTGAATCCACTCTCTGTTTCTACTCAACCTTACGGGAAGAAAAGGCTCATATTGGACCTAAGACACGTTAACTTTTTTGTTAAGAAATTCAAGATCAAGTTTGAGGATGCCAAGTCTTTTTTGGAGTGTCAGGTAGCCTCACCTTGTGCATGGGCTTGTTCGTTTGATATTAAGTCGGGCTATCATCATATTGAGATATTTGAATTTGATCAACAATTTTTGGGTTTCTCATGGGTGTTTGATGGTGTcacaaaatatttcaagtttacAGTTTTACCGTTTGGACTCTCTGTGGGaccatatattttttccaaagTTATGAGACCTTTAGTTAAATACTGGCATTCCAAGGCCATTAGAATTGTTGTTTATCCCGACGATGGTATTTCTGCGGCCACAACTTTTTCCAAATGCCAAGGGAATTCTTTGCTTGTCAGGTCGGATCTTTTCAAGTCTGGCTTTGTTGCCAACAAAGATAAGTGTCAGTGGGTTCCCCTTCAGGTCATTTGTTGGCTGGGTATTTTTTGGGATTTCAAAAACAACCGTATGTTTATACCCCCAGAGAAGATTTCAGGGATCCTCGAAGAAGTTGTTGAAATTATGTCCTGTTGTAGCATTTCTGCAAGGAAACTTGCTCGTGTTACAGGGAGAATTAAATCCAATTTTTTGATCATGGGTGATGTTTGTAAGCTTATGACTAAGTCCTTGCACCGCTTAATTGAATGCCGAAGGGGTTGGGATGCGCAGCTTGTTTTGGACGTTGACGTCCTGCTGGAACTTAAATTTTGGAGCGAGCATTTACGGAGTTTCAATTGTAGACCAATATCGAGGAAGACTGTTTTGCCTTCTCGCATTGTCTATTCTGACGCTAGTGCTGTTGGTTGTGCTGCCTTTATCTCCATGAACGATAAACCAGTCTCGCACAAGAATTGGGATTCTATTGAGATGAAGCAAAGCTCAACGTGGAGAGAGCTTATGTGTGTCAAACATGCTTTACAGGGTTTTACTCATTTTCTCAAGGGACAGTGCATAAAATGGTACACTGATAATAAGGGTGTTGCAACTATTGTTAAGTCTGGAAGCAACAAGGTTCATTTACATAAGTTAGCAATGGAAATTTTTTCCCTGTCTAAGGAGCACGATATAGCAATCGATATGGAGTGGATACCTCAGTCGGATAATCAGGTTGCAGATTATTTCAGCATGATTGTTGATTTTGACGACTGGGGTGTTAATGATTCTTATTTCCATACGCTTAATTCCATCTGGGGCCCATTTACTGTTGATTTGCTAATTCTGTCAATGCTAAGGTtttattcattgttttttcAACCTGGGTGTTTGGGTGTCGATGCGTTAGCTTTTGACTGGGGTGGGGAGAATTGTTGGCTGGTTCCTCCTGTATACTTAATTCCTCGTGTTCTCGTACATTTTCTCAACTGCAAGTCTTGTGGGGTTTTGGTCATCCCTTTCTGGCCTTCGTCGCTTTTTTGGCCTTATCTTATTCAGGGAAACGGCGCATATAAGAGCTTTGTTGTAGATTTTTTGTTTGTCCCGAATGGCAGAGATGTTTTTGTACAAGGAATATTCCCAGTATTTATATCTCACAgcaacaccagctttattactAAATAA

Transcript

pspe_0.1.m1.52500.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan