Gene detail

Detailed information of pspe_0.1.m1.52909.m1 in Pachyseris speciosa

Genomic Location: Sc0000711:297635...305616
NR annotation: CAH3037936.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.52909.m1

AGAAAGAAGACTAATCGGCTCTCCATCTTTTTTATTCATCCATCGTCTCTAGTATTCTTAATACGGCAGCGATATTCTGCTCCCCAAAAAGAACTTTGGCAGGTTTGTTGTCGATTCTCTAACTTGATGGTAAAGACATCGATCGATGGTTCGATGATGTTTATAGTATTTCTTCATGTAGATCTCGATGGCCATCGAGTTGGTTCTTTGTTCGTCCACGTATAAACTTGAAGTTAGCGGATATTTTGTTGATACAACAAAGCGATTTTCAGCGTTCTTTTCTGTAGCTTTAGGTTGGTTTGGTGAACATTTAGGATGACCGCAGCAGAGGAAAGTGGTGTGAAATCCACTGCATCTGTACATAAAGTCAAAGTTGTTTCACCTTTTGGCTCTGATGCTGGGGCAGCAACGTCGTATGATTATGAAGAACAACAGGTGCCACATTCTAGTCTTGTCACAAGGCAGCAGCGGCAACAACGAGTCTACAACATGATGAAAGACCTTCAGCAGAAGCATTTGGCCACAATAATGCAAGGTGACATAAGTGAACGTGAGACTACTGAAATGCAAGAGTCACAGAATATTTGCCGTATATGCCATTCATTGGGAGATGAACCCCTTATTACACCATGTCACTGTTCTGGCTCGGCGAAGCATGTGCATGCAACATGTCTGTTAACATGGTTTAAGAAGGCTGTGAAAAACACCTGCGAGCTCTGTCGACATAAAGTTGCTATCAAGAAAAAGGGGAAACCATATTCAGAGTGGCGCAAGCCAGAGGACAAGCCTATACCACTGATCTGGTTTACCGTGTTTTTTCTTGGACTTTTCCTCAATATGTTCTCCATTGGCATAAATGCTTCAGATCTTTGCATTAGCAcagcctgtgtaatattttacgTGGTGAATGGATTTGGCGTGGTTCTTGATGCAGCATTCCTTTATTTTTGGTGgacaaaatgtttattttactGGCGTAAGTGGTGTGCTTTGAACCAGGAGTGGTCCATCGTGATTGGCCCCGGTCAGTTGGCTCCGCAAAGATCCAACCAAGAGGAGCGAAGTGATAGAACTACGTCATGTATACAAATTCCACATATAGTTTGATAAAGGGATTATTTGCAGAAATGATATTTAGTTGTATAAAAGGAGATATAATATATTGATACTACACTGTAATGTTGAATAATGCTTTTGTTATTAATCAGCATGACAGTTTCAAGACAGATCAACAAAAAATAACTTGAATATATTGATTAATATATACTAGTCGTTAATGGCACTTGACTTCTATTTACCATCAGAATTACCTGCAGTACCATAAAATATTAGTTTTGATAAGTAGCAGTGTCAAACATTACCAATGAGACTTAAATAATGTTGCTTGAAGTAGTTTATCATTACTGCAGTGTTTGTGAACTGGTGAAAGGTAAATTTACAAAGAAATACTTTTGATGATGTTTGCAAACTGAATAATTTATCTTTGTCTCAACAACTCTGTTGTTGAGCCTGATTATGTGGGGCCATAAATACTACCACAGCTTCATTAAAAAAGAGCGTTTAAGTTTAAATTTTTGGCAATTACATGGTAATGATAGCTGATGTCTTTTTCATTGTGGGAGGAGGGAGGTGCTTTGAAAGGCTTCCTATACATAGTCTCTTTTCATATTTAAAATTGCCACTGAATACAAACACCCAATGATAAATTGATACAGGGTTACTATTGACCTACAGGTACAGTAGatacatacttaattatcctccTGCCATCAGGGGCTTTTCAGGGCTAATTAACAACACTGGCCAGGGGAGTTTTTATCAGACTGCTTACAGTGccgtttacaattaatgaagtaactagttTATGAGTGccccccgtaatgtgaatatcaaaTTGGGATCTTcttcagatggaggctaaccgtgtaaaaatgcgttctcagtgcttttattcagtggCCATGGAGAActtgaaactggactattcaaTTTCATTAGCAATCTCGTatccagagtcctcaggctctttggccagtaGTTAGTTgtcaggagagactctgggcccggggggggtactcccagaaaatttgggtggaggtgtgtggcccgcttcctgaaacccttaccctatttcagaccaaaatctgttattttccctaccctatttcagacctgaccagaaatttgatatcctatttcagacctatttcacctACACAGTTGGCATCAAACATCTCCAGCCGTCAACCCGCTGACCAAACGGcgtgaggactctgggtacaagattgttTCATTAGCTAAACCCAGGCAGTCTGACAAAATGTTACAAAATGAAACTGAAGTTATATTTCCAGTACAAAATGGCATCATTGTTCTCTTTTTGTTGCTGTACCAGATAAAATATCTACAAACCTTTGTTTTTGAGGACTGTGATGAGTATTATTTTAGTGTTTTGTGCATGGAAAAGATGTAGATGGGTTATTGCACATACTTTCAGGGTTAAGGCATATGTTCGTACACAAAACTGAACCTGCGataaagaaaataatatatTGAATTGGAAAAGTGATTTACTTGTAAATGCTTAGAGCTAGCCTCAAATTACATTTGTTACATTTGAGATGAGCTTTAACAATGATTTTCAGTGGTTACACTGCCAAGAACTGTTGTTGTGTCCTGTTCAGATTTACTGATAAATAGTATTTGAAAGTCCATACGTTAGTTTTATCCCTACGCAATGTTGATTCCACCTAATCACTGTTTATCATCGCATCTGTTCTCTTTTTATGTTACGTGATCTAAGCAGAGCGATATTCTCAAGGTATTCGTTTCAACGGTCTTGTTATATTAAGTAAACTGAATCCTCAATGCTATTCCACGATTAAGAGTTAGTTTGAGTGGTTTAGGTTTTCCATCTTGTTCGAATTAATGTTCTTGAAGGCTACTTTTGAGCCTAAAGTAAAGTCTGATTTGAAACTAAGTAAAAGTCAAAAATCTTTTGTAAAAATATGTAATGACATGATCAGAAATTAAACTGGAATCAGAGTTCAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12906	RINGv	RING-variant domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011016	Domain	Zinc finger, RING-CH-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46065	E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan