Gene detail

Detailed information of pspe_0.1.m1.53254.m1 in Pachyseris speciosa

Genomic Location: Sc0000724:123108...149639
NR annotation: XP_020631556.1, uncharacterized protein LOC110068518 [Orbicella faveolata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.53254.m1

ATGGCCAGAAAAATCCCAGACGCCATCGCGGATCTGGACTGCGCCCAAGAGCTATTTGGTCAGCGGAGAATGGCAGAAAGTCGGAAACGAGCACTTTTGATTGGTCCGAATTATGCACCAGACCTGCCTTATGACGTCGTTGGCCCACTTGAAGGTGTgcaaaatgatttgaaattgatGGAAGGAATGCTCCATGGGAATGGTTTCCAAAGACATGATATTAAGGTTCTTGAGGGTGACAATGCCACTTTTGTTAATATACTGGAGTCCTTAAAGGACCTGGCATCCATTGCGGAGAGTGGGTCAGTGGTCGTCATTTACTTTAGTGGTCATGGATATCAATTGGAAGATGAATTTGATGAGGGTTTGCTTCCTGCTGGTCTTACCAGGGAAATGGTTGACAAGTATCACATATATGATGTGTGCATAACAGGGGAACACTTTAAACCCCACCTCTACAAGTTAATTAAAAAGGGCTGTCTGGTCAATACCATTTTTGACTGCTGTTTTTCTGGTCGCTTGTACCGAGGCTTTGTTGATAAAGATGGCCCCTCTCTAAACCCGAAACAGCTAAAGTTATCCAAGGAATACATCAGAAAGTATTGTGAAATTTTAAAAGCCAAAGGAGTTCCAGTGGAACATGGTGAGCCCTACCCTACAGATAGGCTCTCCAATGCAGTGCAAGAGGAGGAAGGCAACAAGTCAGAACATGACGTACCCTATCAAGAAACACAGCCACCAAGCCCTATGGACCAGCAAACACTGCTTCAGTACCCAGCCCAGGAATTTTTTAACAAGATGTGGAAGTCACAGGGTTGGCGACCAGCAGAGCATGATAAATTCATTCATATAGGCGCCTGTGCAGCCAATGAGCGAGGATACGAGGTAACTAAGGTGGGTAGTCCTGGTGGATGCTTAACCACCGCATTGGTAGAAGCCATCAATGAGGCAAAAGGCAAGAGGATATCCTATGGTATTCTAAAGAGcctcataaaacaaaaattttcaGAGAAAAATTGGACTGGCCGGCAAACACCACAATTTGAAGGCGGGAACTTGGACATGGTGCTATTCAGTTTTGACATAGGATTTGAGGTTAGCAAAACAGATGTGGGATCTGAAAAGGTCCATTTAAATGCCGGTAGGCTACATGGTGTTGTCGATGGAGACTACTATGTCTTCCCACCAGAGGCCACAAGCGAAGACGTCACTCGAGTAACAATGGACAGAAATAGGTTGTACTGGATCGACAGAATAGTTATCAACCGTGAAGACATTTGGCCGCTGCAGTCTCGTGGCACAATAGTGGAGAAAAGTAACACTCAAAGCAAAATTCAGGTTGGATGGAAAGCCGTTCTGCTCAATCGTAACAGCATTTTTACACCTGTTGTTATCAATGCTCCTCCTGAAATCACGCCAGAACAACGAAAACGAATGCCTGAAGCAATCTGTGGCCAGGACATGTTTACCTTAGCAGAGGAGGAAAAACCTGATTCCATCATCTTGGACATTAAAATAGTTGAAGACAAACAATGTTGGAGAGCCCGCCGGAATGGAAAAATGATAGCACCCTACCAAGAAGTTGGAGACGAATATCTGATGGCAAAGAATTTATCCAAGTATTTTCGACATCAGTTTGCTATCCTCCCAGAGCCAGCGGATGACGAAATGCTCACCCATGTgagctttaaaatatttaaagtgGAAAAGGTGCCGTCTTTCAGAGGGGCTCCAGATAAAAAGATGGAGTTGATAGCTGATGCAGTCAACACACTTCCAGATCTTTCTGAAGGAGCCACGCCAGTCTTCAAGGCACACAAAGTAGCCCTGGGAACGTCCATGTACTATCTTAAGAGGTACAGAGTTGTGGATGGCACTGGTGATGCGCTCGTTATTGAAGTGACCAACAACGAGAGAATACCAATACATATCTGCCTTATATCTTATCAGGCAGATGGCTCCATTGTGGGTCAAACTGAAGTGCTGAGAGCCGGCGAGTCGGCGAGAACCATCAAAAGAGTTCTTCTGGAGCCTGAAACTGTTCGACGTATGGTGGAACCAGACTTTGACAAGGACAAGCCAAAGAGGTGTAATGACGTGATAATCCTGTACGCTACTACTAAGGAAAGCGATTATGAACCACTCACTCAGACGCCGATTGAGCTCAGTTATAAGCTGAGCACAAGGAGCCCCAACCCACCCGATAATATAAGTCTAGCTGTGGTGAGTCGGTTTAGAGAAGCTTTGAAGCCCCGACGTGACGAGCAATGTGCTCGGGATGCACCTGCCAAGTGGCTGACCATGAGACGGGAGATCACAATTGAATACAATGAAGATCCTTAA

Transcript

pspe_0.1.m1.53254.m1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004381 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR050452 all species →	Family	Metacaspase	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48104 all species →	METACASPASE-4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.53254.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.