Genomic Location: Sc0000727:49733...69772
NR annotation: CAH3171266.1, unnamed protein product [Porites lobata]
| CDS | |||||
| pspe_0.1.m1.53335.m1 | |||||
| Transcript |
| pspe_0.1.m1.53335.m1 |
| Protein |
| pspe_0.1.m1.53335.m1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| A2VDN6 | Splicing factor 3A subunit 1 OS=Bos taurus OX=9913 GN=SF3A1 PE=2 SV=1 | ||||
| Q15459 | Splicing factor 3A subunit 1 OS=Homo sapiens OX=9606 GN=SF3A1 PE=1 SV=1 | ||||
| Q8K4Z5 | Splicing factor 3A subunit 1 OS=Mus musculus OX=10090 GN=Sf3a1 PE=1 SV=1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | ULD|UBL|NEDD8 |
| Ubiquitin Family | ULD|UFD/UBQ|UBQ_Other |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01805 | Surp | Surp module | Family | Interproscan |
| PF12230 | PRP21_like_P | Pre-mRNA splicing factor PRP21 like protein | Family | Interproscan |
| PF00240 | ubiquitin | Ubiquitin family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035967 | Homologous_superfamily | SWAP/Surp superfamily | Interproscan |
| IPR000626 | Domain | Ubiquitin-like domain | Interproscan |
| IPR035563 | Domain | Splicing factor 3A subunit 1, ubiquitin domain | Interproscan |
| IPR000061 | Domain | SWAP/Surp | Interproscan |
| IPR029071 | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR022030 | Domain | Splicing factor 3A subunit 1, conserved domain | Interproscan |
| IPR019956 | Domain | Ubiquitin domain | Interproscan |
| IPR045146 | Family | Splicing factor 3A subunit 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15316 | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0000381 | Biological Process | regulation of alternative mRNA splicing, via spliceosome | Interproscan |
| GO:0005686 | Cellular Component | U2 snRNP | Interproscan |
| GO:0045292 | Biological Process | mRNA cis splicing, via spliceosome | Interproscan |
| GO:0071004 | Cellular Component | U2-type prespliceosome | Interproscan |
| GO:0071013 | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12825 | SF3A1, SAP114; splicing factor 3A subunit 1 | - | Spliceosome | ko03041 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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