Gene detail

Detailed information of pspe_0.1.m1.54093.m1 in Pachyseris speciosa

Genomic Location: Sc0000752:293206...295768
NR annotation: CAH3190897.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.54093.m1

ATGAAAGAGAAAGATCAAGAAGAGAAGCGAACAAACAGACTTCGTAGCTTATGTTCCACGTCTGGCTTGTTGCTGTCTGTTGTGTGTTGTATCGCACTAATTGACGTGGAAATCAGAATACAACAACAGCATCGACTGATATCACATTCAGTAAAATCCTGCGATCAACTAGAGACAAAAATACTCCGCAAAGTACAGCAGAATTCCGCAAGATGGCAACACGATAAACACACCAACACTGAAGGTCACTCGCGCGATACAGGAGGCATCGTGTTTAGAGAAAAACGAGCCAGCTCACCCGATGATTCACAGCCACAGAAATCACTCCAAACAGCTTCTGAAGTCAAACTGCTGATCAAACAAGAACTTCGTATCCTGCAAAACCAGCTTTGTGTTAGAGATGAAACACTCTGTCGCGAAGGACCAAAAGGTAACGCAGGACGACGGGGAAGACCCGGAACCCGAGGGAGGCCTGGTCCCCCAGGGAGATCCGGCCCAGAAGGACCTCCTGGGAAACATGGACCTATAGGACCACAAGGACTAATGGGGATAAAAGGGGATCTCGGAGTGCCGGGTCAACCTGGTCCTCAGGGACCTACAGGCCCACCGGGGATGAAAGGCGCCAAAGGTGAGCCGGGCCAGTCCATCTCGGCTCCTTCTCTGCTGCAGAGTCCGGTTAGAACCACAGTCAAGGAAAGTCAAACAGCCATCTTGAAATGTACAGCTGATGGTAATCCACATCCACAGGTCACGTGGTCTAAGGTGAATTCATCGCTTCCGCCTGGACGTCACGTGATTGAACCCAGTGGCGCTCTGATAGTGAATGACGTTCGACCTGGAGACGAGGGAGTTTACAGCTGCAGTGCTGAAAACTTGTTGGGAAGCGTCAACGCCTCAGCTAAACTTACTATTCAATTCGCTCCTCAGATTTTGCTGTCATACAAAGCACTGTTGGCAGAAGATCAACAAAACGTCACCATCGCCTGCACTGCCACTGGTCAGCCGCAGCCCAGTATCACGTGGTCCAAGTCACTTGCCGAAAGCGAGAACCAAGGGATGAAAGGAAACCTGGTCATCTACAATGTGACAAAGAAAGACAGTGGAACATACATTTGCAAAGCAGAGAATATTCTGGGATCAACAACAGCCTTGGCTCAACTCACAATATTTTCTCGTCTGCGGTTCAAAGTCCATCCTCCTCCTGAGGTGACTCCTCTCATTGGTTCCACTGTTCGACTGCCGTGTAAGGTCGAGAGTGACCTGAGAACTACAATCACTTGGACAAAGGATGGCAGGTCTTCACTTCCTGGGGTCTCACACGTTTTATCGAATGGAACAGTGCTTCTTCAAAGCATCAAGAAATCACACGAGGGAACTTATACGTGTAGAGCGACTAATGCACTGACAACAATAGAGGCTGAAGTTAAAATAAATTCTCCAGTCAGCCCGGGAAAATCCTGTTccgagataaaaaaaaaaaagtatatcaGCAGTGTGAGCGGAAATTACATCATTGATCCGGATGGCACAGGAGGTCTGGCACCATTTACAGTGAACTGCGACATGACCGACAAGAATGGTGTTGGCGTGACAGTCGTTAGTCACGACAGTGAAACCAGAACCTACGTGAAGGGTTATGAACCTCGAGGTAGCTACTCACGTGACATTCATTACTCAGGAGCGAGTCTGTCTCAGCTGGCGAGTCTCACCAGAGTCTCTTCACACTGTCAACAGTTCATTAAGTATGAGTGTTATCGTTCAGTTTTGCTCCCCGACAACAATCCATACGGATGGTGGGTGTCACGTGATTCTACTAAGATGACGTACTGGGGCGGAGCATCTGATAGTGGTAAGTGCGCATGCGGGATGACCAACGCATGTGCATACCCCAGCGTGGATTGTAACTGTGATAACAATGACGATGTATGGCGTGAAGACAGTGGTCTCCTCACAGACAAGACGCGTCTACCAGTCAAACAGCTCAGGTTTGGGGATACTGGTGATAGCAGCGAACACGGTTACCACACACTGGGGAAACTGAAGTGCTATGGCATTGCATAA

Transcript

pspe_0.1.m1.54093.m1

Protein

Uniprot

Uniprot term	Description
P97846	Contactin-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Cntnap1 PE=1 SV=1
O54991	Contactin-associated protein 1 OS=Mus musculus OX=10090 GN=Cntnap1 PE=1 SV=2
P78357	Contactin-associated protein 1 OS=Homo sapiens OX=9606 GN=CNTNAP1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan