Gene detail

Detailed information of pspe_0.1.m1.5429.m1 in Pachyseris speciosa

Genomic Location: Sc0000004:2761637...2775587
NR annotation: KAJ7355129.1, hypothetical protein OS493_027918 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.5429.m1

ATGTCTCACGTTGACGACTCTATGGCACAATACCTTGAACCAAGTTCTGGTGAAAACGATGAAATCAACTTTTCACCACCACCTACGCCAGAGTTTCGTTACGATACGGGCAACGAGAGTTTGAATGACCATGATATGCTCGACATTCCGTTGGACGGAATAAATGACACGGAGAACAGCcctccaccatcacaaccaagaccacTCCGGTGCAATGACAATCCAAAGAGCCCGCCAAACAAACACAGCAACAATGGTCCTCAAAAGCCAGGCCTCCCCAAACGAGGTTTAAAGAGGAGATTCACAGATCAAAAGACTGTGGAGACTAAAATAGCCAAGACTGAACTCTCTATCGAAAAGCTAGAGAAACACATAGCAAATCGCACATGTCCGAAGTCTTTGCAATACTCGGCAAAGCCAAACATAACGCCGGACGATATTTTTGCTAAAGAACTGAGAGACATCAAACTCAAAGCCGAACAGAGTTTAGTCAACGCACTAACTCTCTTCCACAAACGAAAGCTTGAAAGCCAGAAGAGGAAGTTTAAGGCTAATCCAGATTTTGCGGTTCGAAAACATAAAATTAATAGTCTTATGTTGAATGAcgataaaactgaatttatcgTGATCGGAACCCGTCAGCAATTAGCTAAAGTCAATGTTACTAGCATACGAGTGGGAAATCATTTGATAACCAAGTCCAGATCTGTTAGGAATCTGGGTACTTGGTTCAATGACACATTCGACATGTCCCAGCACGTGACCAATCTGTGCAGTGCATCATTTTTTTCAAAGTCTTACTCCACGCTTGGCGATCGTTCTTTTAGCATGGCAGCTCCTCGTGTTTGGAACTCACTTCCCTCTTTCATTAGGAAAGCCACCAcaTTCATAGGAATCGACAATTTCATAGGGTGTTGTGTCAACGTTCTTTGCGTAGATCCCGCAGTTACCTCGTGCCAGTCCCTACGCAGTTTGGCTCCTTCTCCTCCTTCGGGTGTTTATTGGATTGATCCTGACGGTGGTTCCCCAGCAAACAAATCCAAGGCTTACTGTGACATGGAAACTGATGGAGGTGGTTGGACACTAGTGTGGAGTTATCATTTTACTAGGTACCATGATTTTAACAATAATTTCAACGCAATTACACCAAGACCGGACTGGCCAGCTAACGCTAATGTCCCTGTCTCAAGGACTCCACCACTAAGCGAAAGAAATAATAATGCCATGGACTTCGCGCTGTGGAAACAGCTTGGCAGTGAGTTCCTGATCAAGAGCAACATTAACAATTGGTTGATTTGTCGTCCAGGAACAGGAAGTTTGGTTGATTGGCAAGGTGGAAGCGTTGACTGTGAGGTCATTAAACGCGTGAGTGACAAGTGCATTGGGGCGGAAGCACCTTCCAAATTTGGGTCTGGGGAAAATGGACCGGCGTTATACAGGACAGGACAATGGTATAGCAGCACTTACTACTATTTTAAAGGTCACACCCAATATGGTAACCCTACCCATGATCCTTGTGGGGGGTCAAACCTTCATAACCACTTGAAGAATGTGGGTAACCCACTTGGCAATatctttgttcgataTAAAAAGAAGTGGCCATTACAGCAGTGTAAACGGGTTCATGAGCACCTTCAGGACAACGCTGTTAGTGAACATAAAACAATGAGACACTGCAACGTTATTGTTCTTGACGCTGCTGTTACAGAGAGAAAGAATGAGAGAAACAAGCAATCAATTGAacaaggaaggaaggaagaaagaaagaaagaaaggaaggaaggaaggaaggagggaaggaaggaggaagggaggaagaaagggaggaaggaagggacgaagggaggaaggaaggaaggaaggaaggaaggaaggatggaggaaggaaggaaggatggaggaaggaaggaaggatggaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggaaggagggagggagggaggagagcCA

Transcript

pspe_0.1.m1.5429.m1

Protein

Uniprot

Uniprot term	Description
P19477	Fibrinogen-like protein A OS=Apostichopus parvimensis OX=1902835 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146	INTELECTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08240	E2.7.11.7; myosin-heavy-chain kinase	EC:2.7.11.7	Enzymes with EC numbers	-	deepkoala