Gene detail

Detailed information of pspe_0.1.m1.5508.m1 in Pachyseris speciosa

Genomic Location: Sc0000005:425167...427471
NR annotation: CAH3161893.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.5508.m1

ATGGAAAACATCACTTCGAAATGTAGGGACCAGGAGGAAGGGTGGCTGAGTGGTCAGAGCGCTGgactgaggccttccaagggtggtctggtgtcgctttgtcgctcgtttacgactctgtccttcgcttgttttgttaaggacaaatgtcgctgtcgcaacgaaaacaaagaggaatggaaagtgaactgtcgcgcgttttctgccaatgtctgtcggttgtcgatgttttgggagaagattgtcgccagTTTTCGGAGCTATGTCGCTtctcgcttctaccccttggaaggcctctggACCTGCACTGCAGAGGCCCCGGGTTCACGCCCCCCTCTAGCTCTGGTCTGCCTCctaccagttgggattcttaacctgttatatTTGTTTGAATTACTTGTTTCGTGTGTTTGCTCGGctccactagcctttgtgtgctataaatactgccgaggGTTTTGCTACCCTTGTGTGGAGGCTATTTTCCAGAGGGAACCAGAGCAACGGAAATGCCCGGATGATGGCGAACTACTACAAAGACACGAAATTTTCAGAGACAAATGTGCTCAGAAAGAAGTTCTTGATCTGGAGTGCTTTTGTCCCAAGAAATCACTTGGGTGTGTCTGGAGGGGTCAACTTCGTCAACTTGAGGACCACGATGCCGAATGCCCCTTTTCAGAAGTGAAATGCTTATTCAGTAATCTTGGGTGCGATGTCGTAGTATTAAGATATCAGTTAGCAAAACACATCGAAAAGGAGTGTATATATAAGGTCGTGCTTTGCCCATACTGCCAGGTGGGTTGTGCTGGAGTTAAAATGAGGGAGCATTTGGAAGAGTGCGCGAAGTTTCCTGTTAAATGTCCGCATGGTTGTGATGAGAGTGAAATTCTCAGAGAAAAGTTAGCCGAGCACGCGAAGTCGTGCCCGAAAGTACCTGTGCAGTGTAGCTTTAGCTCTATGGGATGTGATTTTATTGGTCCAAGGGAGGCTTTGGATCAACATATTAGTTCTAATGCTGCTAAACACTTAAGTCTCTCCGGGAAGTTTATTAAAGATATCTTGGAGCAAATGAAGAATCTACAAGTTCAACTGAGTGCGTCACAGGAATTGAATGAAACCTACGAAGCACGGTTGACCCTGCAAAATGAAGCTCTAGCACTAAATAAGCAAACCCTCTCCACGCATCAGTTGAAGCTGGCAAGAGTGGAAGAAAATCTGGACGCGCAGCGAAAGACCATTGACGAACTGCGTAAGAGCGTCGAGATGGTTAAATCTAACGAAAGCAAACGTGATGGTCAAAACAGCTTGGAAATGATGCGTCGCTTGGACTTTCAAGAAGAAAGATTAGGGTTGCTAGCCGAGGAAGTAGCGCAACTCGGCGAGGGACCACGCCCGCGTTCCGGGCCGCGGGAATACGGGGCAAGTGGCAACAATCATCGGCTCGATCGTTTGGAACACTCTGTGACTTTACACGAAATTCAACTGGCTGATCAAGATCTTAAGTTTCAAATTCTGGAGACCACGTCACATGACGGTACCTTTTTATGGAAAATTGACGAGTTTGAACGCCGGTTTCGCGAATCTGTGGAAGGGAAGACTATCTCCATCTATAGCCCTCCGTTTTACACTTCGCGGTATGGGTATAAGCTTTGCGCACGTGCATATCTCAACGGCGACGGACCAATGGGAAAAGGAAAATGCATGTCGTTGTTTATCGTATTAATGAGAGGGGAATATGACGGTTTACTGTCTTGGCCCTTCCAACAAAAGATTACCATGAAGTTGCTGGATCAGGAACGAATTTCACACGTTACCGAGACCTTCCGACCGGATCCGAACAGCTCGAGTTTTCAACGGCCGCGTTCGGAGATGAACATCGCCTCGGGATGTCCAACGTTCTGTTCACATCACCTATTAAGATCGAGAGGATATATTCGTGATGACACGATTTTCATTAAAGTCATTGTGGATACTATCGGACTACAAATGATCTAA

Transcript

pspe_0.1.m1.5508.m1

Protein

Uniprot

Uniprot term	Description
Q60803	TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
Q13114	TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2
O00463	TNF receptor-associated factor 5 OS=Homo sapiens OX=9606 GN=TRAF5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF21355	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR049342	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03174	TRAF3; TNF receptor-associated factor 3	-	Alcoholic liver disease	ko04936	deepkoala