Gene detail

Detailed information of pspe_0.1.m1.55233.m1 in Pachyseris speciosa

Genomic Location: Sc0000793:393...9687
NR annotation: CAH3021616.1, unnamed protein product [Porites evermanni]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PJW8	DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876	DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
Q8CFI7	DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001360 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04560 all species →	RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	Domain	Interproscan
PF04567 all species →	RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	Domain	Interproscan
PF00562 all species →	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015712 all species →	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007641 all species →	Domain	RNA polymerase Rpb2, domain 7	Interproscan
IPR007647 all species →	Domain	RNA polymerase Rpb2, domain 5	Interproscan
IPR007121 all species →	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR037033 all species →	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR014724 all species →	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR007120 all species →	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0032549 all species →	Molecular Function	ribonucleoside binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03010	RPB2, POLR2B; DNA-directed RNA polymerase II subunit RPB2	EC:2.7.7.6	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.