Detailed information of pspe_0.1.m1.5535.m1 in Pachyseris speciosa

Genomic Location: Sc0000005:918414...926300
NR annotation: XP_020631284.1, uncharacterized protein LOC110068241 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
C6DI713'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=tatD PE=3 SV=1
Q6DAQ13'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=tatD PE=3 SV=1
D0KC773'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium parmentieri (strain WPP163) OX=561231 GN=tatD PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01026TatD_DNaseTatD related DNaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR001130Family3'-5' ssDNA/RNA exonuclease TatD-likeInterproscan
IPR050891FamilyTatD-type Metallo-dependent HydrolaseInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR032466Homologous_superfamilyMetal-dependent hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10060TATD FAMILY DEOXYRIBONUCLEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0016788Molecular Functionhydrolase activity, acting on ester bondsInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008310Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03424tatD; TatD DNase family proteinEC:3.1.21.-
Enzymes with EC numbers-deepkoala

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