Gene detail

Detailed information of pspe_0.1.m1.56206.m1 in Pachyseris speciosa

Genomic Location: Sc0000830:75144...98312
NR annotation: XP_029211579.1, RNA-binding protein Musashi homolog 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.56206.m1

TATTAGATCGCTCCCGCGTTGCTTGCAGTTGTTAGTTTAAAGCGTGTTCTGAGTTTGTgaaatcatttcatttccgaaTGATAAAGTCCAGGATGGTTCGAGGAACAAGCAGAGGAGACGATATTGGGAAGATCTTTGTTGGTGGATTGTCCACAGATACAACCAAAGAAAGCCTTCAAGAGTATTTTTCTGGGTTTGGTGAGGTTACTGACTGCATTGTCATGCGGGATAATGCCACGAAACGTTCAAGGGGTTTTGGATTTGTCACATTTCAAGATCCAGCTTCTGTGGACAATGTATGTCAAAAGTCTGAGCACATCCTAGACAGCAAAAAgATTGATCCGAAACGTGCAGTGCCTAGGGGTCCAGGACAGCATGCCGTTATTTCCCAAAAGGTCCTGCTGGTCCTCCTATGAAGGATTCCGGAAACAATGAGAACAAGATATTTGTTGGTGGACTTGGAAGTAGTTCATGTGAAGTTGATGTATGACAAAGATACCAACAGGATGCGAGGCTTTGGTTTTGTAACGTTTGACTCAAGTGAAGCTGTAGAAGATGCTGTCCGTAAACGTTATCATGACATCAATGGAAAAACGGTTGAGGTAAAGAAAGCTGAGCAGCAGCAGCCCAGAGGAATGGTACAAGGTGGAAATATGGGCATGGGTGCAGCTCATATGAATGCTGGCTATGGGAGGGGACAATATGGATACCCACAACAACCAGGGATGATGGGACCTACAGTTGGCATGGGTAGAGGGTATCCAGGGTATAGCACCATGGCTCCAGGATATCCAGGGACTGCACCCATGGTCGGCACGGCATATGGCTATAGCATGGCACAACAGCAAGTTCCAGGATATGGATCAGTTGATCAGTCCACAATGTATGGTACTCAAGCTGGTCAGGCAGCAGCAGGAGCTTTTGGAACAACTTATGGCACTGCCCCAACCTCAGCTGCTGCCTCCATGGCTGCAACATCTGCTTATGGTGACTATGGCCAAATAACAGTAGCTTCTCAAGCTGGTATGCCAGGAGCAGCTCCTGGGGCCCAACCACGCTTGGATTCTACTGCTGCCCCTGACTACACTGCTTATGGGCTGGGTAACTATCAACAGCAGGAGTCCACCTATGGTCCAGCCAGAACGTCTTTCTCATCAGACAGCGGCAgctatggaaattatgctgctGCTGATCAAACAGGTTATGGAGGCTCATCATATGGAGGAGAGTCATTTGGTAGAGGGGCACGTGGATTCCATCCATATGGTCGCTAAAATCAAGATGATCTTTCATCCAGTCAAATTGTTTTCTAAAACTATGgagatttcaaagaacaattGCACCTTGTTTCTTAgcttttttggcaatttttcttgGCCATTTATGGTGGCTTTTACAACAAGGTGCTGTTTTAAAATTAGTGTTATTTCAGCTAAAGTGGTATAttacaaacagtgtaaggagAGCATCAGGTTTTTTCAGAGCGTTCACTTTCTTTTCTAGGTTTGTTACTGTTTCATATAGCAGAGAACACTGCTGTTTTACATTAAGTTGTTACGTCAGCAGTTTTTGAAACTGTTAATATCTTTTGTTCTCAGCTGGAACATTTCACAACACAATACTTTTATCTTTGTCAGTTATTGAAAGCTGATAATCCATAACCTGAGACCTGGTTAAAAGTAGTGATTAAAGGTTTTTATCAGAGCTGTTTCAATTTCTATTTGCAATTTAGAAACACTTATGCAGACACATAGTTAGTAAAAGTCTTTGTAAAATGAGCTACATTGCAGAAGGGAAACTGGCCATTCTAAATGCAAGAGTCCATTCATTCTGTTAAATCTGAAAGAATCAGCAAGCAGTTGCAGAACACTTAACAAAGTGGCAAACTGTAATGTTAACAGCATTGGAGGCACCCTGCTTGGAACAACCAGCCAGCAGTGTAATATAGCCCAGCTATGCAGAAGAATGCATTATTACCATTGTGACAGCTGCTAGGGACTCATGAGATTGAAAGGAGAAAGGAAAGGGCAGGCCTATTGTGTCTTTCTATTAGTGACTATGAATTTCGATATAATCTATGCCCTACAATTACATTGTTCAGAGGATTTTTTTTATGCTTctgcttttttttatttttttttttttttttgggggggtgCTTTTCATTTTGGTTAGGCTTAGTAGTAAAAACAACTTAAAACACGAAGCTAACCTGAAACTGTTCAAAATAGCAATGCTTGGCATcatctaagggcctgtttaagAGGCTTTTGAGCCTGGTTAGGCGAGATCTCGGTTCCCATATAAACACAgccaaaattttatgaagaaataaggatGAACCGAGCCAGCCCAGTAAAGTGGGCCAGCCCACCTAACTGGGCTGGAAaatctcatataaacaggcccttagattTGGGAGGGCTTATTCTCAGTTGGACATTTCTTATCAAAAAGGTGCTTGTATCTCAGAATTTTCAAGTGAGTTAGTTGCTGTTTGTAGTGGCAGttgtcaattaaaaaaaaacatctgtTGCAGT

Protein

Uniprot

Uniprot term	Description
Q8W034	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1
P48809	Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2
Q98SJ2	DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14411	MSI; RNA-binding protein Musashi	-	Messenger RNA biogenesis	ko03019	deepkoala