Gene detail

Detailed information of pspe_0.1.m1.56582.m1 in Pachyseris speciosa

Genomic Location: Sc0000846:336703...359580
NR annotation: XP_020628732.1, 15-hydroxyprostaglandin dehydrogenase [NAD(+)]-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.56582.m1

agatCTGATCAGAGTCGCAACATAGACGGTAATAGGTATCACAAGCTGAAGCGTCTGAATGCCAACGACTAAGACAGTCCGCGAGTTGATTGTGTTTTCCAGGGACATGCAGTGCTCGCACTTCAAAATCGAAGAGAGCGGCAGTGAACCAAAGTTGTCGCAGACAGCGTTGCATGAAAGGATCCTTTGAAGTTGTggaattgattttttttatttacaaaatggttgcAAGATCTCGCCCATCTTGTTGCTGAGAAAGCTAGTGTCATGTGAGATATTCAAGCGCGACATCAATATGAATTGTTCTCTGTCAGTACTTTGAAGAGTAATGTGTTTTCATGTTTCAGAGACATACGCCAAACTGAAAATGACGGCAAATCATAGCCAGTCAAATGGGCAGAGGAAAATAAAACTGGATGGGCCAAATGGAGAAAAGTTTCTTGAAGATATTGAGAAGAATAGGAGATTTTACTGGCCCATGAGTGGGATTAAACAAAAGGGACCTTTTGCAAGAGGCAGATCAGGTGGCAAAGGAAATACCACTTCCTCAAAGGCACGTTGTGCCTCAAAGTCTCCACCTGTAACTGTGACACTGGAAGACGCTTCAAGCTCAACAGCAACCCCTGCCTCCATTTCACCACCACCAACGCCACCTACAGAAACCAGCACTGAACCAGAACTGCCAAAAGGaacaccaccaccgccaccacccaCAACTCCACAAGCACTGCACAGAACACCACCACTGCCACAATTAACACCATCACCTTCCCAGCCCTCAACGCCACAAGTCAATGACAACAACTATCCAACCTCGTCACAGTCATCTACCACATGCACcaaaggaaggaaaaagaaaagatcCCAACCATGGGTTTATCTACCGATCACTGAGAACAATAATCAGGAAGTGGAAGAATTACCGAAAAAAAGGCCAAGGAAAACCAAAAGAgtttatTTCCTTGACATAAACAAAAAGACTGGAGAAGAAACAGAGGTGCGGCTTAATAATGAATACGGAGCTGGAAAGGTCAAGTTTGTTTCTTGTGACGTCACATCACACGACCAATTAGAAGCGGCATTTAGAAATACATTCAAGGAAAACGGCCGACTGGATATAGTGGTCAATAATGCAGGAATACTGGACGAGAGAAACTGGGAAAGAACACTAAACGTTAACCTGAGTTCTGTCATTCATAGTACTTTCCTCGGAATCGAGCTCATGAAGAATGGAGTAATCATCAATGTGTCCTCCACCGGAGCGTTGACCAAGAAAGGTATCAGAATAAACTGTGTTTGCCCAGGAGGCACAGATACGGATATCTACAAGGCCCTGGAGAAAATGGAGCTTAcgaaaaaacaacaagaactcGTATCTAACTTGCCTAAACAGAGACCTGAAGCTGTAGCTCAATGTATCGTGGATTTAATCGTAGACGAATCATATATGGGACAAGTGGTAAAAGTGACGTATGAAGACGGTGTGGAATATCTAAACTACAATGACGTAAGTTGTTATGTAATCTCTTGTGTTGCTGTCTCACTGCGTAAGGCAACTAGAGCTGAAACCCGCTCCAAGAAAACGCTGAAACCTTTTGGAGGAAACTACACTTGGAAATGGGTGGAGAACGCATAAGCCATCAGTTGACTGGAGATAAAAAGAAACCTtagaataaaagaaataaatagtTAACTCCTTTTCCTGTcagaaatattattttttaccacaattgctggtaatctcgcaatctgattggctaatttgccgttgtcgataagagtcttgACGAAGTTTCTCGATTGCGCCGGTGTCACGCAAtgcctttttcattttctttgacgttgatattgtggtaaaaaaacaaaaacaagtggAATGTCCtgttagcgttgtctgtactcttatcgacaacgatattcggcATCACACATAGTGGTCATTACCACTGTGGTCAGTGAAGAATATCGCTGTCGATAAGAGTACCGGACAAcactaaaccacattccatttgttaATTCGATATAGTTGATCCTGATTTGAACAGGCAATATCAAAATTAGAGATACGTGTGGGTAACTACTGTACATAAGAGGACTGCTACACCTAGCTtagaatcttttttttttaagttttagtgATAGATTTTATTTTGTCTTGGAAGTAAAAAGGTTAATCGTCTTAGCTTACACCAGTGATATGATGTAGATACGAACGATACATGAAACGATGCATTTTCCAAATATGCCAGGCATATTGGCAAACGTTGTCTGGGGCTTTTTTTGATTGTGTGAGAAGTAATGTTGTGTACAGTACTTAAGGCTTGCATTCAATCCCACTATGGTGACTCTTTGTAAAGGATCCCTTTACTTGTTTGCAAACACAGTCTCTCTGTGTGTTTGAAATGGAGTTCTTCTTGAGATCACATTTTTGTTATTATAATTTCAGtttctttattgtaacttgttttgttaggagaagggtaataaatttgtttgttgttattatgaaaaaaaaaaataaaaataaaaagacaaATGTGGCCTACATGGCAGGTGTAAATGGGGATAGGACTAGTCCTATCCTAAAGTTCGCACTTCCCTCCTTTGATGTTTTCTTCCCTTTCTCGCtagcccctccccctcctcctcccgtTTGCACCT

Protein

Uniprot

Uniprot term	Description
P70684	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Cavia porcellus OX=10141 GN=HPGD PE=2 SV=1
Q3T0C2	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Bos taurus OX=9913 GN=HPGD PE=2 SV=1
P15428	15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Homo sapiens OX=9606 GN=HPGD PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44229	15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan