Gene detail

Detailed information of pspe_0.1.m1.56612.m1 in Pachyseris speciosa

Genomic Location: Sc0000847:375986...377971
NR annotation: CAH3041666.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.56612.m1

ATGGTTTCCACATGTTCCCTCTCAGACGTAACTGAACATAACGATGAGTGCGTGAAAGGAATTAGTGGAGTGGTCTAttctgaacaaacaaagacgAACTACAAAAACTATCACTGTCTGCTTTGCAATGGAGTGTCGACCGAAGACATAAAATGCGGACCAAGGGACAAACAGAATATCTTCAATCCCAAGTCATTTGAGATCATTATGGAATTTTTTTCGGAACCAGGAAAACCGCCAACGCCGAAAAAAGATTCAGTGGCCTCTGCCTGTGCCACTAACACTGTCTATGATCCACATTTGGAAACTTGCAGAACAGGTTACGTTCCCGATCCTTCAACTGCCATTCGTGACAAGTATCGCGTGCAACTCTGGATGTACCCTTCAGATGACCAGATGAGGCCAGTATCTCCAGAGGAATTCCGCAGCGCCCTTTGTGCTCTCTTTTTACTGGATCCCTCGCAAATAGACGAAATATCAATTGCAAAGGAAGATGGTTCTCTCGCTGTAGCGTTTGACTTGTACGCTGATGGTGCTGTCATATCTGATGACAAGATGGGTGATCGGGACACCCTTGACGTGTCTTTTCTGCTCGCTTTCAATCAATCATTCGAGATCACCATTGAAAACAAAAGATGGACTGTTCTTCGGGTTACTCGGAGACAGTTAGCTTGCGTTCAATCAAAGGAATTTCTTCATGGAGAATTTGAGTTACATCCTGATGGTACTGCTTCAATAAAAAATACTAACGAATCTTTTGCTCCGAACCGGTACTTTCGTGTAAAGCATGACAATACTGCTAACGATTCACTGCTTGTATGCGATTCCAAATTTACTGTTAAGTGTCCATTTGTTTTGCTTCCTGTTAACAGTTCTGaatacaagatattttccaaCAAAAGTTTACTACACAACACCACAGGCAGATTATACACAATCGGAGAATACGACCTTGATGGTAAAATGGCACTTATTTGTACCAACTATACCGCCATGAATTATATAAACTCTTCCGTCCAAGTGACGTCGCACTCCAACGCCACTATTAACACAAAAAGTGCAAGTAACTTTCTCTGGAACTTTACTGTCATCGGATTTTCCGTCTCGATTTTCACCCTGATTCTGACGTTggctgtacactttctctacaATGAGCTCCGATCTCCTCTCCCAGGAAAGAATCTCATGAGTTTGTGCGTGGCCCTCTCCCTCTCCCAATTTATGTGGTTGTTGGGCACCGGAGACACTGATAAACCTATCTTTTGCACTGCGGTGGCGGCAGTGCTGCATTACCTTTTCCTGGTGTCCTTTGCTTGCACAGCCATGATAGCCTTCGACACGCGTCGCACCTTTTCCAGTCAGATTTCCAAAGCTCCCGGTCGCTCCATCGCGGCTGGTAAAAAGAATCGGCGATTCTTGGCTTATACGTGCGTGGCATGGGGTGGACCATTGCTGTTTGTGGGTGGCTGTTACCTCCTTGATCACTTTCAAGTAGTGTACATAGGATATGGCAATGAATACGCCTGCTGGTTGGTCAACAGTAACGCCAAGATCATCACATTCGCCACTCCCGTAGCTTGCGTGCTTTTGTACAACGTTGCAGCATTTTCGCATACCGTATGGGCTATCAACACTGCCAGGAAGCAAACAACCAGAGTGAAATCCACCCGTTCAGACCGAGGAGTTGTCATTAAGATTTATGTACGTCTGGTTTCCCTCATGGGCTTCTCTTGGTTTTTCGGTTTCAGCGCCGAGCTCGTCCACAAAGCACTGATCTACCCATTCGTGGTACTGACAGTTCTTCAGGGAGTGTATATCTTCGTGGCTTTCGTTTGCAAGACTCGAGTGCTGAAGCTTATGAAAGCTTCATTTCCAAGGTCCAGGAAGGATGCGCTGGCGTCCACCCAAGACACTTCTAGTACAGTTTGCAAGAGCGTTCAACCATATTCGCAGTACAGATCGGAAACGGAGGATACGCATATGTAG

Transcript

pspe_0.1.m1.56612.m1

Protein

Uniprot

Uniprot term	Description
Q9NYQ7	Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens OX=9606 GN=CELSR3 PE=1 SV=2
Q91ZI0	Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus OX=10090 GN=Celsr3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR053231	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45902	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04599	MTH; G protein-coupled receptor Mth (Methuselah protein)	-	G protein-coupled receptors	ko04030	deepkoala