Gene detail

Detailed information of pspe_0.1.m1.56836.m1 in Pachyseris speciosa

Genomic Location: Sc0000855:45765...50314
NR annotation: CAH3154121.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.56836.m1

GATCATGGGTGAAAATGTGAAACGGCTCATTACATCCTCGACACGGTCGCATGAACATCTTCAAGTGTTGAATAATACATAAGAGTTAGTATATTCTAGTAGTTTTGGAATGGGAATTAAGACCCTTCTTCCATTTTTGAAAGACGTAACGGAAGAAACGAATTTGCAGTCTTTTGAAGGCCTCGTAGCCGCAGTTGATGCCTCTTGTTGGCTTCACAAGGCGATTTGTTTGAGTTATCAGCAACATGGCGATGGTTGACGTTCAGGATATTTGCTCATCATATCTGGAGTTACTGCAGCGAAATAATGTTACTCCGTTGATAGTTTTCGACGGCCTTCCGTTACCGGGAAAGAAAGATGAACGTGAGAAAAGAGCAAGGGTTCGGgcagaaaataaaaagaaagctGAAATAATGTACCGAAGTGGGATGGTCGCGGAGGGAAATAAACTTCTGGCTGCAGCATCAGGAGTCGAACACAGCATGGTCCTCGGTTTTATTGAAGTATTGTTCAAGTTAAAGCTTAATGGTCAGTGTCAACTGATAGAGTTGGATAGGACTCTGCAACACCTACAACTCAGCCAGGAAAATTTCCTCGACATGTGCATTGTGGCTGGATGTGACTACTTTGACAGTATTAGGGGAATTGGAATCAACAAAGCCAAAAAGTTAATTTCTGATGAAAGCAACTTCCTTTCAGTTTTACAAGGAATGTCACATGCTCCTAAAGAGTATAGTTCAGATTTTCTGAAAGCGAAGGCAATATTTTTGCATCAGACGGTGATCAACCCTGTAAATGGCACAACAGTACCATTAACGAGATGGGAGGACACTCCAGATTTTCAAAAAACCGAAGAATACCAGATTATTTGTGGAAACATTCTTTCAAGGGAGTATGCTGTTAATCTTGCTCTCGGCAATGTGAATCCTTTGGATAGCACTACAGTCAACTCCACTTTCCAGCTACCTAGCAAGGAAGGATTGTGGCAGGAAAAAGATATGACCATGTCAGTCACATCTCTTGAAGGTAAAACTGACTGGACTATTCCTTCCTTTCCAGTCCTGACACTAAAGTTTGTCAAGGCAAGTGTTTCAGTTAGAGGTTCTCAATTGGATGCACTGTTCAAGGCTGAGGATGAGGTACAGTTGGAGCCTGGGATTAAAATTATATGTTCAAAATGGTGCTACATTTCAATTGAACATACAAGGTATTTGGTGGCATGGGAATTTAGAGAGGAATCTGCTACAGCCTTACATCAACCAGCTGAAACTGAGAATGAAAATACATCTTCAGATGAAAGTGCCAGTGGAGATGATAGAGACCACACTCTTCCCTTCAAGGTGCTTGGGGTGGCATTTAAACAACGTCAGAGGCACTTGGAAGCCGCTTtccaaaaattggaaaatggaGAGGAAGTGAGAGTTGATATACAACCAGAACCAGACAGTGACTATGACAGTAATGCAATAGCTGTTTTATTAAACTATGGTACTGGATGGTACACAGTTGGATATATTGCCAAGGAACTGACTAATGAAATCCACCCACTCCTAAAAACTGCGAACATTAAAGTAGCAATAAGTCACATTAGATTCCGATTAACATATTTACTTATTGGCTACTATCTTACTCTAAACATCACTAGGAAGGGTCAGTGGAGTCCTAGAGTTATTTCTGCTTCTAAAACAGTTCATTAAATATTAAAagattagtatatactaatacaGTGAATAGTTTTTTGCacacgctctgattggctactgaAACATGGAATAGCaattgctattcacctccgagcaaaTGCACATGAAAATTTTAGTGATTGACAGAAATAAATTGGTTCAAAATCATCAATTTCACactatattatctcactgttttgtGGTACAATATACTAATAaaactattcacctcagtgtcagtggCTAGCAGTGGGCATTTACCTCGCTCCTTCATGTCTTGGTAAATATTCACCACCAGCCACCTCCATTATGTTGGATTGGTTGTTAGTTATATTTGCTGAACTTATACTAGCATGTACATATAATGGAGACCAAAGGTGGGGATTAAGCAGCATAATTTGTCCTTTTCATCTAAACAGAATCCCCTGCAATTGCCTTTAGTCTAAGTTCAAGTTTCAGTTCTAATTTGACTTACAATTATTTGTTTTCCATGAAAAATAGTATTCATTTTCAGATCTTTTAGACAAACCTGTGGTATGTCAACTATGGAAATCTGCAATGGTCCAGTGAACTGTAGCACTGTGTGCAGGTTACAAATGAATcgtgtgcttttttttttttagaatagTATAACACTGTACTTTTGGAACACAATTAAGTTTATTTATAACTGCAGTGTTTTCATTGTATTTAGTTACTTAACAAAACTATCAGAATATACCCTCTGAACAATGTTATGTTGAAGGCCCACTTTCATCATGGATGTTATATGGCCATGTTCTTCTTCAGACATCCAGTGTAGAGACCTCAATTCAGTGGAATATTTAACCCAGTATTGATACACCTTTAAAACTGGATCTTAGCACAACTTTCATGCAGGTTGAAAATAGATCATAAATGCAAGCTAGAGAAATTCATTGAATCACTACAACTGCCAATTTTGAGATGGTCATGAATACAATAAAGCTGAATTCCAGTCCATACTGCGCAGTCTCGAgagtttgtttatgttttttttgttttgcgtCATGTAAGACATtaaaaaatgtaaacatttagcaactacttacatgaagtaaattcaaagtttaaAAACAACCGCC

Protein

Uniprot

Uniprot term	Description
Q24558	Exonuclease 1 OS=Drosophila melanogaster OX=7227 GN=tos PE=1 SV=1
Q9UQ84	Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2
Q9QZ11	Exonuclease 1 OS=Mus musculus OX=10090 GN=Exo1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08797	HIRAN	HIRAN domain	Domain	Interproscan
PF00752	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014905	Domain	HIRAN domain	Interproscan
IPR006084	Family	XPG/Rad2 endonuclease	Interproscan
IPR036279	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR006085	Domain	XPG, N-terminal	Interproscan
IPR029060	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR008918	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan