Gene detail

Detailed information of pspe_0.1.m1.57575.m1 in Pachyseris speciosa

Genomic Location: Sc0000885:316269...321274
NR annotation: XP_022792935.1, 17-beta-hydroxysteroid dehydrogenase type 6-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.57575.m1

CTAAAAACAACATTACGTGACGTCCAAACCGACAACAATAATTTgacttgcaaaatttcatggctTCTTTCCTTGGCTTCAATCCACTGCCAggctcatctaaatatttttcatcTTCAAGGGCAGTCTTTTCTTTAGCTGTGGTTAAATCTCAATTGTTTTGTCTACCAGTTATTAACTATTCAGCTGTTAATATCGTAATAATAACACAGCCAACGCGGGAAATTACAACCCCGACAGCTTCCGATCAACAAATCGTTGAGATACTGCGTGGAATATGGCTTTTCCAGTGGTCATTTTGTGCGTGATGGCTGTCGTGTGCTATCTTTTAAGGTGGCTATTTGTGACTTTACGGGAAGAAAAGGATAAAGTCGAGGGCATAAGGAACAAATACGTTCTTATAACGGGCTGTGGATCAGGGTTTGGCAAGGAAATTGCGGTATCTCTGGATCACCTTGGGTTTTGTGTATTCGCTACTTGTAGAACAAAGCAAGGAGTAGATTCTGTAAGAGAAGTCTGTAGTGAAAGGGTGAAGACGTATGTATTGGATGTGACAGACTTGGGACAAGTTCAAGAGGTTCTTGAAAGAATAAAGAGGGAGATTCCACATGACAAAGGCCTGTGGGGGCTGGTGAACAATGCCGGCAAACTGAAGGTGGGAACAGTTGAGTGGCAGCCGCTGGACAGTTTTAAGAGCATCGCGGATGTTAATCTTTGGGGTATGGTGAGGGTCACACAAACGTTTCTACCCCTGGTGAGGAAAGCGCGTGGAAGAGTGGTCAATCTTGGGAGTATTCTTGGTCGAATAGTTCTTCCGTATTTGCCCGCTTACGCTGTCTCCAAATATGGTGTTGTGGCCTTCACTGATGCTCTCAGGCGCGAGATGCACCCCTGGGGGGTACGGGTTTGTATCATCGAAGCGGGGGCTCACAAAACAAAGCTTTTGAGCGGTGATCTTTTGGCAGAGCAATGGCAGGCAGAGTGGAATGAACTAAGTGATGAACTGAAGCAAGAATATGGCGAGGAAGGGCTGCAAAAAGGTTTGAGTTCTTTGAAACTTTTCGACAGCGTAACCTCACCGCATACCTACAAAGTGGTGAACGCTGTCGTCCATGCTCTTACATCACGTGATCCGCAAAGTCATTACCTCATTGGCCTGGACGCCAAGGCCCTGGCGTGGTTATCAACGATGCCGACCTACATCACTGACTTTCTGTTTAGAATCGTGAGATTCACACCAGGTCCTAGAAGAAACTACAAATCGACGTGAATATAGGAATAAAATTACAGTCATTGTGGTTCAAATATTTATTGGCAAGAATTATTTGGATAGAAAAAATGGAAGTCATCAGATGATAATGAAGTCAGTTCACGCCGGACTCAGTAAAGAGCTCtagcaacggcaacggcaacgagaacgccacaaaaccaTAGCtttaatgagcacaaacaatgcCTCTACGAGTAcaatttacattttggtacattatTTGGAGTAATCCTGTGCCTATTGCTAacctctattttcattggtacgtaaggccctggcaaacgagcgggacacaaaacaaaacgttgtgtttccatgctgtgaaaactgggaaacatttgttgcggacacataatgtttctggaaaaaatcagaaacattttttgtgtctcggacacacatttttgtgtccgcaacaaatgttgcgcgcgcgggcaaacaggcaaacagggaaacatttgcgtCCGCAACAACGTTTCCGCTACAATTGGTCAGGGCCTATAcgacctgtagcttcttttgttatcaggaaTAAAGgggggtattgtttgtgttgtatcatctattgtttcattctccAATCGCAGACCACGTCTGGAAAGCTACAGGCTCTCTCATTCTTTGCTGTCGTCTGTAGTACAACATCGTGCGATGacaaaattcaaggttttgtaTGGAACATGAACGCATAATGctaaattttttctttcttaagcTTTTCCTTTACTTCAGTCAACGCCGTTAACagcaatttagttcctggatggtTCACCCACATTTTACAACTTGAACGAAGTTGAAAAAATCGCCAAACAGTTTACATGTGCAATGACTTGGAGCTTAAAATAGCGGTCTTATTAATATTTCTCGAAGATAACATAAATTAAAAAcgacaaataaaacaaacacaacaaaataaTGAAAGATTATGACCAGATTATAATATTTGATGATTGAAGCTTTGTAGTGG

Protein

Uniprot

Uniprot term	Description
Q9BPW9	Dehydrogenase/reductase SDR family member 9 OS=Homo sapiens OX=9606 GN=DHRS9 PE=1 SV=1
P50170	Retinol dehydrogenase 16 OS=Rattus norvegicus OX=10116 GN=Rdh16 PE=1 SV=1
P55006	Retinol dehydrogenase 7 OS=Rattus norvegicus OX=10116 GN=Rdh7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43313	SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0008202	Biological Process	steroid metabolic process	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan