Gene detail

Detailed information of pspe_0.1.m1.5789.m1 in Pachyseris speciosa

Genomic Location: Sc0000006:1761139...1764921
NR annotation: XP_020603197.1, uncharacterized protein LOC110042190 [Orbicella faveolata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

pspe_0.1.m1.5789.m1

CTAACAccagccattttgaaaattcGAAAAAACAAACTCTTCTGAACATGCGCACCTTTGTCAAGCCGCTGAAGATTTTTGGGCTCAAGAATAAGATGTGCCTTACTTTTTTCCTGGCTTTCTTGGCACGAAGATCTTGTGCATTTCGGTTGTACACGGGAGGGAATGTTTTAAAATTCGTATAGAGCAGTTTCTAGTATGAACATCTAAGGTTTTAAAGTATGATTTGAGTAATTTGTACTGTGATGGGATCGGTAACGCAATTTGCGTTTGGTGCGGCGGTTGGTGTTGCTCTTTTCATCGGCGCGAACACAGCTCGACGATATTTTCTTGTTGCGCCAGCAACAAACCAAACAGAACGCGAACAAAGAAATTCTTCCGATGATGCTTCTCCAAGACAAGAGCAGATACACGCCATACAGAGTGCTGCGACGCCAGTCCGTCACGTATCCGAGACTTCTGACTCAGAGGCCAATGTTCTTGCTGGGGAGGAGTTAGATGGCAAGGAGGGACAGCATCTTTTAAATCTTCTCTTCAACATTGCCGAAGATCAAGCGAGAAAAGAAGGCTATATTCACCGTGGAATAACGTGCAACTCTTGCCAGGCAAGCCCGATTTGTGGAATTAGGTATAAATGTGCCAACTGTGTGGACTATGATGTCTGTGAGCGTTGCGAAGTGAAAGATGATCATAACAAAACTCATTTATTTATCAAGATCCGAATTCCGATGCCTCCATTGACAAATCCGAGGGCACCTTGCCTCAAACCACTGTATCCAGGTATCAAAGATCACCCTTGCTCCATGTCTTGGGATGAAATTCAGCATCTCAGGGAACAAAGTCATTTTGACCAAGCAGAAATAGAAGCTCTGGTGGAGCAGTTCAAAACTCTGGCAACTGAAAAGGCAGGAATAACACGCACAGTTTTTGACAAGTGTTTGGGTCCTTTGGGACAGAACAAGAATCTGGTCATGGATCAGATGTTTAAATTTTATGATCAGAATGATGATGGTATAATTGACATTGATGAGTTTGTTATTGGACTCTCCATACTTGTCAAAGGCAGTGAGAAAGAGAAGATCCCATACGCATTTGGTGGCTGTGACATTGAGAAGAAAGGCTATATTTCCAGGGAGAACCTACGGAGCATGTTTAAAGCTTACTTTGAAGTGAGCCTGGAGCTTGTACGTGATGTTGTGAGGTCATGTGAAGAGGAGATGATGGCCTCTTTTGATGACTCAGCTGACAAGCCAGTGTCGTCAGTGTTTAATGCTCCAATTCCCAATGGCTCTGGTCCATCAACATCAACTGGAAAACCAGCCATGGTTATGAATAACCCTGGTAATGCAAGTATTCAGGGAGTTGATGGAAGATGGCCAATTATGGAGGCAATGTCACAAGATGCGATTGATGAGATGGTGAACAATGTGTTTCAATGTGCAGATACGAACAAAGATGGAAAGATTTCCTTTGAAGAATTTGAAGCTTGGGCTGCTAATGATAACACCATATTAGCTTGGTTTGAGGCCCTTGGCACAATCTTCTGACTCTGATGGGGCATTATTTGCTTATTCTTCAATAATGGCCATGGTCATTTAAAGAATGTTGTTCAGGTTagacagggctgtcattaacaaaattaatacaaAGTGGCTGTTATGATATCCAGCTTAAGTTGATTGAGTGATAGTGACCAGCCAGTTCTCAGACATCTGAAGGGTTCTGAGTTGTTATCTTTTAAATATCCCTGCAACTTATGTGAACTCTGAAATCTGATACATGCCAGCACTTAAACATcaagatatttttttattctAGTCGTTCTAAATGCTCTTGTATGTGAACAGGCTGCTTTTTGAGAAAGGCAATGAtggaaaaatatttcaattgaTCAAGTGTCAAATCTGCTAGTGGCCTACCAAGTGAGATATCCATAGTTCCCTTTATTTTCATGCTCTTCTTTCCACTTTAAACTTTGAAATTCTTACTATCTCAAAAGAAATAATTGTGTATCCCTTGGATATTTTAGTACAGTACTTTTTTGTAGTAAGCAGTATCCTTCTTTCAAACATATTGTCCCTGGATGTTAAAGGTATGGGCTGTTTTTCAAGAGCATAGTGATAGCTTTGCATTTTGTCAGCTTGTTTATGATGGCACTTGGTCTGTCTGATATATTTTAAGTGTGTTGACTGATTTGTCTCTCTAAGGAGTTCCTCAATGTGGCTttgtaaaatacatgtaactgAATATGCAGGCTGTACATGAAGTATTCCAAGGCTTTCTTTCTACCTACTCGCTCTTAAGTTTATGGTGTTTGTACAAATTGAATTacattttccaaaaaaaaataagGTTCTATTTTATTGTTTGGAGATATGCATTTTGTATGAAGTTCAGAATTTTGAGGACTGTTACCTCATATTTGTAATATATTTAATGCTTGTATAGAGTGAATTTTAATAAAAACATATACAAACAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HAE3	Calaxin OS=Homo sapiens OX=9606 GN=CLXN PE=1 SV=1
Q9VUX2	E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster OX=7227 GN=mib1 PE=1 SV=3
Q9Y2W7	Calsenilin OS=Homo sapiens OX=9606 GN=KCNIP3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR045198 all species →	Family	Calcineurin B-like	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23056 all species →	CALCINEURIN B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0019722 all species →	Biological Process	calcium-mediated signaling	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for pspe_0.1.m1.5789.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.