Gene detail

Detailed information of pspe_0.1.m1.57894.m1 in Pachyseris speciosa

Genomic Location: Sc0000899:68212...71725
NR annotation: CAH3178256.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.57894.m1

ATGGCGTCCATTGCAACAGCGTTGCCGACTCCAGGGATTTCTCCCCgttttgacaaacttttgaagGATATTACTACTGATTTGAGTCAGGAGGAACTTAAGCATGCTGTATCATCGATCAAAAGCAATTTTGAAGGGAAGTTCAACGCGCAGGGTGAACAAGATTTGTACTCATGTCTTCATCTCTTTGCGAACCAAGGTCTCGTCTCCGAGGACAATCTGACGTTGTTAGAGAAGTTTATTGTCACtccaaaaacaacaaagaaagaggGAATCGTGGCAAAgattcaaaatttcaaattcacACGCTTGCCAGAAGAAACGACAAGGAAAGAATTAACGGGCAGACACGGTGACGTGACAAATATTCTGACAAAGCTACGGAGAGGTCACGAATCAAGCGTCCTTAACTTGTACGGATCCAGTGGTGTTGGTAAGACAAGGCTCGCCATGGAGGCATTGTCCCAGTGGCAAGGGACGAAATTTAAAATTGACTTGAGGGACGTAAATCACATGGAAGACGTTTATTTCCATGTTTTGCAAGCCCTATTGCATGAAACTGGGCAGACAGTAGTCAGCTATGATGCAAATCCAGTCGTTGCTAAAATGCAGCAAGTCAAGCGAGACAGCACAAGTAACATCCTTTTGCTGCTAGATAACGTTGATCAATTTATTGGTGGAACTTTGGAGGCTGACAATTTTCTTACCTTACTCGAGCGTCTTCTTGTCTCCACAACTGGTGGCAAGGGGGCGAAATTGAAGATTTTATTGACATCTAGAGGTGAATTCCGTGGTGGCGTTCCTTTTAGTGCTGAAAATCTTGAAGTTAGAGCTTTGGAGAAAGAATCTTCGGGTGAACTCCTTCAAAGCCAGGTTATCGCTAACATTCCTGGTAATCAACGAGAAAGACTTGTAGAAATGTGCAAAGGAAAGCCTTTGTTTCTCAATGGTATGGCAGCCATATTGAGGCAGGAGATAGCCGACGCTGAAAGGCTCCTTGGAACAATTGAACAGGAACTTGACTTGCAGCCCCAAGACACGGCACCAACCGCCAAAGGCCTGGACACTGAGGAAAGAGAAACGTTTAATATCCAAGAAGAGGGAATCGATGAGGGGCAGCTGTCATGCCTCagaaaaatgttatttttcctTCCAAGTCAAACGCTCAAGAAATCAGTTGTTTCACTTTCCTTGTTTTGTCGACCATTTTCCGTGGAAGAAGCTGCAAAGATTTTAAATGTAGACCCTTCGGAAGCCGCTATCCGAATGGAGGGAATCCGTAATAGTAAAATGGTGTCGGTTCCTGACGAGAACGAACTCTTGTACGACATTCATCCCTTGATACGAAAGTTTCTGAAAAGTATTGGTAACAAGGCTTTTGCCAAAGCTTACCAGAGGGCAAAGGACAACTTTTACAAGCATTTCGTAGCTAAGTTAAGAGATATTTCATCTCTGTTAGACAAGAACTTCATGGAAGCTCTCGACATCTTtagttttgataaaaaaaactttgaacTTGCCTTGGACATTTCCCTCAAGTCTGACTCTTTACTGATTCCAAAGGAATATCATGAAAGCACTACGATTTATTATCTTTTTGAAGCTATGCTTGATGAAAAGCAAAGAAGGAAGATTTTTCATTCCTGGGCTGAAAAAATAGAAGAAGATGGAAAGGAAGGCTCTTTGTTTCAAGCAGAAATGCATTGCAGAGAAGCACTGGAAGTCTTAAACCTTGAAGGATGGCAGAGAGCAGCGGACGTCTTGAAAGAGGCAAAGGAATCACTCAGTAGAGTTCAAGAAGAGAGCAGAAAGACTGATCTCTACAAGCTCACTCAGAGCTCCTACCTGTTTGTCCAGGGAGAAGTTTACTATAGAGCAGGAAACGGACCCAAGGCGCTCAGAGTCTTGAACAGATCTCTGGAAATAATGGAAGTCCTTACAAaatcaaacattaaaacatgaatacttctcaaactttttatattgccaaatggattttttgcaattgaaaccgggtgtcggcagttatttcaagggaacggcaatcatacagcacgcaaatagagacagaaaacggatacctttattaattaaaatcgtaattaccTTTCTGCTAGTATGCTTCACATAAAAATGGGCTGTTCATAAAAGGTCAagaattatttatatatcaCTCCGTTTGCTGCTGATCCTGTAATGGCGTGTCAAGCTCAAGCCTTCTTGGCTGCTTACTTGTTTCGTTTTTAGGAGTCAGTAACAATTTATTACAATTGTTGACTTCCTGAGAATAGTAGGATGCCTTTCATCGGCGTTGATCTCATAAAGAACGGAATAAAACTTAATACTGAAGTCTACAGAAAGGCAGCAAACACTgctttactcttgcattttaagagtcatACTGATAAACGTTACAAGGACTCTGTTAAAGACAATGTTACGTCGCGCTTATGCGTCGTCTTCTACAGTAGAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00931	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039203	Family	Disease resistance protein RGA2/3-like	Interproscan
IPR002182	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36766	PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0050832	Biological Process	defense response to fungus	Interproscan
GO:0043531	Molecular Function	ADP binding	Interproscan