Gene detail

Detailed information of pspe_0.1.m1.58033.m1 in Pachyseris speciosa

Genomic Location: Sc0000904:250358...254038
NR annotation: KAJ7378109.1, hypothetical protein OS493_024774 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.58033.m1

CTGGATTATCGCTGATCAATGAATTTTGAACGGTTTGAATGTATTTGATGGAAAGTCGTTTTAAGTGCAATTTATTTGATCGTTTACTTCAGGTTTTGGTACCACTGAAACATGTGGCTTACTTTCGACTGCTTCTTGAAAGATTCGCCCTGGGGCTAAGTTTAGTCGTTGCATATGCTCGTGTTTGGATAGTGTCCATCTTCACCGGAATGTTCTATGAAGTGGGACTGTTAACTtgaaaaaaaagtatttgcTGGTAGATATTTACTAGAAAACTTTCTGAAGCAACGAATACAACATTGCTTAACCTGCCACTCTAATCCATGCAGATGATTTGAGGGTCATTTCACATTATGACATGATTGAGCATAACTATAGCGAATACTTTCGCAGCAAGATATTTTCCGTGGCATTAGCTCGTGCAGATATATTTTTATTCGCTACAATATGCATTCAATTATTCCGCTGACTTCTGCCAACTCGTTTAGATTTTTCTGTGGCTGCAACTTCCCATATTAAACGGAGTTCAGTCGCCGTGCAGGAGTATCCAGCTGTCATAGAAAATGATGGAACAGGCTAATTCAGCCAATTTTACCATTGCTGCATTGCTGGGATCAGTAAGGCCTCAGCAAGAGCTTGTCAGAGGTGCTGCTGTCTTTCGAGAAAGTTTTCAAGGAGGAGAGCGAGGAAGTCTTCGTTGTATAATGGAAAGCGATGAGGAAGACGACCAGGAATCACGACTTCCAGATAACCGAAATGACTTAAACAAAGATGAAGACATCCGCGACTCAAAAACAGCCAGAAAGTCAGCCAAAACGAGAAGAAAACGAACCGCCTTCACCAGTTTCCAGTTGAAGTGTCTCGAGGAAAAATTCATGATGAACAAGTATCTCACCATTGCTGAAAGAGACATGTTGGCGAAGTCTCTTCAACTCAGCAACAAACAAGTAAAGACTTGGTTTCAAAACCGTCGCACAAAATGGAAGAGAGAAAACGTTGGAGAGGCTATTCATCTGGCTTATGAAATACAGAACAGTGGCATTGGACCCTACCACCCCCCATGGGTTCCAATTTGTCATTGCCCACCACCTCCGCCAGTGTACAGAATGAACACAATGTACTCTTATCCTGCGCCGGCTTTTATTTCACCGCATGGAGCTCAATAACACCAATAAAGGATGGTAAACAGGCACACAAGCCTTTCCCGTTTCCCTAGAAGCTCTTGACGCCCATACACAAGAACTGACAATATGATGTAGAAGTGACCAAAGGAAATAGTGCTTACATTCCTTGTAAAGTAAAATTTTTGATATCGCAGAAAAATTTCAGCCGGCTGACGATCTTCTGTTTGTGTGAAACCGCTCAACAAGTAGAGGGCTAATAATGGGTGTGATTATTCCTTTTGATAAATGGCTTATTAAGTATATTACTGACTGTCACGCATACAATGACTGCACTGGCTTGCACCGGATGCCGCCACTGAATGAAGCCAACGTGTACAGAAAGCAAATACATGTTGTAAATATAGCTTTATTTTCTGTAAGTGATTTACCTCAATATGTTTACTCTGAACATTATGGTTAAAAGGGCTATCGAGTTGACTATTAAGTACACAGAGAACAAATTACACTCCTCTTATTATTAAATGTAAATCCTGCCAACGTTGGCTTATGGTCGTTTATAGGACTGTAAGACATTTGATAAAATACGTAAATTTCGTTATATAAGGTCTTCTAGAGAACGCATAAGAGTTTCACCGAAAAGAGATCATTTAGAAATAGGTTATAAAATTCACTGAGCTCACTATCTAACCGGCTTTTGTCATATAACCGGGATTCAACGCGGTGAAATGTAACTAGCCGTTGGTGGCAAAAGCCCAATAACGTTACTTTAGTTCCggtcttttctttctatgtAACAGTTCTAATCTTGTTTTTGCAAATCCTCTGACCGTAAATACTTCAACCGTGCGTAACCTATTAAAAATACGGAGATTGTTCATAACCTTCAGCAATTATACTAACCCAGCCAAACCACATTTCTTCAAAGTTGATTGGATGAGCTATGTATCCCACGGATAAATCCGTAAGAAGCGGATAAGCTTCCTTCAAATGAACGAGTTTGGCCTCAAAATAGACACAGTTTATCCCCTGCATTGGGACTTATCTTCGTCAAAACTTGGCACCCCGAGAAGGATCTCCGAAATCGGCTTAATTCATGCCCTAAAAATTCTCAGTCTGGCAGGATTTAATATTTCCTCTTGTTACTGCCTTAGGTGTGGTTTAAGTTTCTTCAAGTGCTGGATAAAGCACCGTCTTTCTCTCGTGGCCACATGTTCTATCCGTGATTTCTTTAACTCTCTCTTAATTAACAAGAATTGCCTCTCCACTGATCGCCATAACCCAGCGGGTTCAGCTTTACTGCACATGCACCCGTTCTCTCGTGTTCGCACACCAACGATTATGTTGTATGATTCATGCCCTTCTGTTGTAGAGCTACTGAGAAACATTTTTACTTTGTCGtactctgcaaaaaaaaaaaaagttatataC

Protein

Uniprot

Uniprot term	Description
P15858	Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE=4 SV=1
P53547	Homeobox protein ceh-1 (Fragment) OS=Caenorhabditis elegans OX=6239 GN=ceh-1 PE=3 SV=1
Q75W95	NK1 transcription factor-related protein 1 OS=Danio rerio OX=7955 GN=nkx1.2lb PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050848	Family	Homeobox domain-containing transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24333	HOMEO BOX HB9 LIKE A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09360	BARHL; BarH-like	-	Transcription factors	ko03000	deepkoala