Gene detail

Detailed information of pspe_0.1.m1.58754.m1 in Pachyseris speciosa

Genomic Location: Sc0000935:215975...226917
NR annotation: XP_029187206.2, histone-lysine N-methyltransferase PRDM9-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.58754.m1

ATTtgatcgtcttcgatcgaaaaGTGGATCTTTTCCTCTCTCTCTTTACGTTCTTCACTTTCTTATCCTAAGGATACTAAGAGGCTTTGTGTGTACTTACCCTTCTTTGGGTACTGTAGCATGGCATCAGACTTGGTGTTAACTCAGAATGAAGATTACATTGTCTGTGACGAGTGTGGCAAACCATGTATGTTTGGTAATTGCCCTGATCACGGACCACTGGAATGGATTGATGACAGCCAAACACAGCCAAAGACCCCAGCAACAGACAGCTTACCAAGTAATCTGTACCTGATGCCATCAGATGTGGGACAGGGTCAGATGGGTGTGTTTGCCAGGGCAAGGATTGCAAAAAGGGTGATGTTTGGACCATTTAAAGGAAAGAAGATCCTCACAAAGGAGACAAAGTTTGGAAATGATCAGAACTTCATGCAAATGTGGGATGTTTTGTCAGATGGGAAAGTACTTCACATTATTGATGGCACAGATGAACAGCACAGCAACTGGATGAGGTTTGTGAACTGTGCACGTGATAACAAAGAACAGAATCTAGTGGCAATGCAATTCCACGGTGAGATTTACTACAAGACCTGTGTCCCTGTCGAGGCAGGCAGTGAGTTGTTAGTGTGGTATCAAGACAGCTGTGTACAGACCCTGGACAACTCAACACGGAAAGAACAACACGTTCCAGGTGATGATTTAGTCTGTGAGGCTTGCGGACTGATGTTCACTGGATCAACATTCCTTCTGCGGCACAAGTCAGTTCGTTGCCCTGGAGTGTCAAGGTCATCTCAAACTGCAGCCAATCCACAAGCACTGGACAAAGGGACGTCAATTGACGACGACCAACCCATATCATCATCTGAGGCAACGACGGAGGCGGAGTCATCGTATGTTGTTGTTCATATAGGAAGTACTAATGAAAACAATACTGTTATTGAAACTGAAGAAAATTCGccttatgttgtggttcatgTACAACCCGCTCCATCTCAAACGAAGCGCAAAACGCAAAGCGCGGAAAGAGGACTCCGGTTGATAGAGAAAAAGTCAGCTCCGGGAAAAAGTCCAAACTAGCGAATTCTCCCCAACATTCTACGGACAGCTTGAGAAAAACTAAAAAGGAAGTGAGTAAAGTGCGTGTAACAAAACCCCGAGCATCTCCGTCAAAAGCTGGAAATAAGTTGGCTGAGAATTCGTCACTAACTACACAGAGTCCAGCAAGTGGAAAACGTAAAACGACTGTTACCAATAGTAATTCTACACCTTCAAAATCTCGCCAAGGAAACGCTGAAAAGACTAATAAGGCAAGGACTGTTAAGAATCGTAAGATGTCTAGCGGCGGGAAGAACGAAGCTACCGGTGATGGAGGTATAAAAGAACAATCTGCAAAGAAGAAAATGCCCAGAGCAAGGAAGCAAGCGAAAGCTCGAGAGAGTACATCAAACTTGTCCTCTGCTCGCAAAAGACCCAGTTTACAAACGGAAGAAACCGAAGGTGAAAACGAAGATGGAGTTGCCGAGGAACTATCACCTCAGAAGGCCCCGCGTAAAGTAAAGAAAACCAGAATCACAGAAGGCGAACAGGAACCTATTCAATCACCAGGAGATAATTCTACTGTCGCCAAGGGTAAAACAATCAAAAAAGCGACTCAAGAAAAGCCCGTGATTACCTGCGAGATATGTTCAACGAACTTCAAGTGGAAATCTCAGCTTCAATATCACATGAGGAAGCATGCACCCGAAAAAGAATTTACGTGCGAGTTTTGTAACAAGGGTCTTTCACAGTTATCGTCACTGAAAAGACATTTGCGTGCTCACAGCGGAGAGAAACCCTACGAATGCCAGGAGTGCGGTAAGAGGTTTTTGGAGAGAGGAAAGCTTATGCTTCACCAGAGAAAACATGCCGGTGTAGAACcggaaagaaaatacaagtgtaCGGTGTGCGATAGAGGTTTCACGCTGAGCGCGAATCTGCGGACCCATATGCGGGTCCATACAGGTGAAAAGCCTTATCCTTGTCCTCAGTGTGGTAAAGCCTTTAAGCGGAGCTCAGATGTTGCCAGCCATCTTCGGAGCCATACGGGAGAGAGGCCCTATAAATGCTCTAAATGCCCCAAGGCCTTCACAATGATCTCGCATCGCAATCGACACGAAGTTATACACACTGGTGAAAGGCCATTCAAGTGCGACCTGTGTGGCAAGGGGTTCACTCAGCCTAACTCCGTAAAAGCTCATTTAAAAGTCCATGCTAAAAGGCAGGCGCAGCTGGAAAGCGCCAAGGAAGATGCTGGAAAACAACGGAAGCAGACGGCGCCACGAGATGCTGCTATGCAGACGGAAGGACAAGCTGAGGGAAATGAGATGGCGGAAGGGAACACTGAAAACAATAGCTCGGGACAGCCACCGTTGGCCGTAGCTCAAAGAAATGGAGCTACAACGGTGGTTAGTATAGAGGATGCCCATACGGAAGCGCCAGAAATTGGAAGAACAGAAGTGGTCGAAGCGGAAAATGTGCAACAGGGCGACGTATATGCGAGGGAATCGGCGACGTCTGGGATTCCTCATGGGGATGGGGCGGGGCCATTGCAGTTGGCCACCACTGGAGTAAGTGAGCACTTACACTTGGATAACGCTGTGCATGGGATAGCAATGCAACAGATGGCGTTAAGAGATGGAACAGGACTGACAACAATCCCTCCGGAGCAACTGGAGTTGAGCTGTACCAATGAACAATTTGACATTGTCAGTGCTAAACTTAATGGTAAAGAACTATTACCCCAGACCTGTGTGGATCAATTCAACAATGATTCGGAGCATCAACATTTAGAGGCTGCTCAAAACAATGGGCAGGACCATGCTGCTCAGAACAGTGGGCAGGACCATGCTGCTCAGCAAGAAGAAAGGACACTTCTGGCCTTGTAGGACGTCACTGGTTTTGAAAACGGATGTTATAAACATAGGTTCCTTGATTCAAAAGTAACTGGCGTTAGGCTTTAGGGGTAACTCTTAGGAGAGCAACGCAAAAATGTAGTAATAATTGCCTTTTTTGCTCGTTTGTTCGTTcctttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtctGTTCGTTCGTttatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13465	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan