Gene detail

Detailed information of pspe_0.1.m1.5876.m1 in Pachyseris speciosa

Genomic Location: Sc0000006:2846121...2855497
NR annotation: CAH3105471.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.5876.m1

AAGCGCAGATGCCATTACAACTTTCGACGTGGCTTCGATCGAAAGTTGATGACATAAATACCGCAAACTTCTGTACAAAAATATCAGTTCACGGATTTATATTGCGCTGTTTTCCTATTTCTCCAAGCAATCATGTCATCGGATTTTGGTAACCCTCTAAGAAAATTCAAACTGGTCTTCTTGGGCGAGCAGAGTGTGGGGAAGACTTCTCTGATAACAAGATTTATGTATGACAGCTTCGACAACACCTATCAGgCAACTATTGGGATAGACTTTTTGTCAAAGACAATGTATCTTGAAGACAGAACAGTTCGACTCCAGCTCTGGGACACAGCAGGTCAAGAGAGATTCAGAAGCTTAATACCAAGCTACATAAGAGACTCAAATTATAACTCTTTTCAACAAACAGCAAAGTGGATTGATGATGTGAGGACAGAGAGAGGCAGTGATGTCATTATTAtgctggtcggaaacaagacaGATCTCTCAGACAAAAGACAAGTGACAACGgaagaaggagaaagaaaagCAAAGGAATTAAATGTCATGTTTATAGAGACAAGTGCGAAGGCAGGATACAATGTAAAACAGCTCTTTAGAAGAGTTGCTGCAGCATTGCCAGGCATGGAGAGTACAacagacaaaacaaataaagatgACCTTATTGAAGTCAAACTAAAAGACACACCACAGGAACCTCAACAACAAAGTGGAGGTTGCGTGTGCTGAAAGATTAAAGACAGTTATGCCCAGCTAGTTAGCTTCTTGAGATcaagttttatttcatttgatgCAAAGAAACTGTCAGTTATGTTCCAAGTATGAATCTTTTCAAAGTCCACTGTGCTTGCCAAATATCTGATAGAAAGATGGGGTGATCAGTATGATTCATTTGTATGGTATTTAAGATAATTATTCCACTGTTTCATTAGCTGTTTTGAAGAACTACTGAAACCTTAGCAGGCATGGAGAGGGCATCAGATCAAACAACAGATCAAACAAATGAATTTTTCAAACTTGAAGATCAGCAACAGGAACCCCAGCAACAGAATAATGGCTGTATGTGCTGAAAGGTCACAATCAATGATCCCCAACTTGTAAAGATCTCAAGTTTCAGTTTATGTACTTTTCATTTTGATTAAAACAAAGTCTGttgacttaatttattcttACAACTTAGGTCAATAATTTTTCTTGGTAAATGTAAGAAAGGCTACTGACAATGCTTGAATCTCATTAGTCCCCTCAGGGGTAAAAGGGTCTTAAAGTAGTGTTGGATTTTAAGGATTTTTTGTAAAACTTCTGAGAAAGTCCTTTACTTTATCAAGCATTGCTTATTTATGAATTTCTGACTAAATGTACACTCCTTTAAAACTGAGCTGGGTAGAGTTCTcgttaaaaggaaataaattagATTGGATAGTAAAATAATCAAAACCTTTTTATTTGGGAAAGAAAGTAAACCAATTCTCAAAAAGTGAGATAATGAAAAGGACCTTGAAAGATCAAGTAACTTATTAAACATTTCTGTGTCAACTATGTCAACTCAAAAGAAAGAATAACatgtttagtttagttttttttattaaataatGTTATTGTGAGTCGTAGTTTTAACAGCATGAGATCTAGAGATGTCAATTTTCCTCAGGCTTCCGATTAGTTGAGTGCACTTGTCATATCTTTTGGGTACTGGTGAACCATAAGGCTAAAGGAAAATTTACTATGTGCTGTGATTCACCAGTATCCCATTCACTCCAAAGCTAACCTGTGGCTACAAAACTTGGTAAGTTTTCTCCACCCAAGGAAAGACAAACAACCAGGTGATCATCAGCAGGACTTGTGGAAAGAATCCTCATCAGCTCTCTATGGGATTTTTCCCAGATCTTGGGGAACTTTTCCATAAACTACAAAGGGTTAGCCTGTTgtataataaaaattatttcagtaAGCACTTGTTAGCCTGTGAACAGTCTTATATGAACAAGAGGAGCAAGCAGCAAGATTAAAAAACATAGACAACCTGTGCAAAGCTGATTTTTTTTTGCTCATTGCACCCAATACAGTGGAACCACCAATGTGCCATAAGAATTTGGTTGTATTAACAGGGTAGTCGAATTTCATGGCTAGTCACTATTGGGGGAGATGAGCATAACTGAATTTTACAGTGGGAACAAACTGCTATACAAACTCTCCTTTTAAAAGCATGGGCCTCAAACTCAATTAAAGAGTTGTTTCTCAAGATTAAATGTAACTTTTCTGTCCCTTAAGAGGGCACATTTGGTTTGAGTGGCCAtattcaggggtttcaataagttttgaaataaccgTCTGAgtgaactaaagtaggcggggacctgataatttttttaaataatttgagtgaaagtacAGACCAATTAGGCGGCGGTAAGTgaaaattctgacaaagtaggtggtgattttcaccggttgccggcttctaatgaaacccctgcataTTACAAGGTAAATATATGTTTGGATTTCACAATTTGGCTGTTGAGGGACCATGGAGACCATTTAAAGTGGTAGGGCTAAAAGGTCTGTCCAAGtgcaagtggtaaaattcatatgGAGACCATTTAAAGTGGGAGGAAGGCGACGGCAACTAagacgtcatttcaaaatgtaacttctcattattgtagcacttttgcgattattccaatttgttcaacttgtaaaatgttggTGAACTAtgaggaactaaatttctatgaacggcgttaaagtgaagaaaaagaaagaaaaatttgccatcatgtacTCATGTTCTCACCAAAACgtaaaatttagtcatttcatgttgttgttttgcagaggatggtaaagaaatgtatcaatatgtaaaacgcacatgcagagccattgtttttgctcataaaacctattgttttgtgacgttctcgttgacattcctgtcctcgtttcttaaagtCCCTACTAACACTATCCATGTCATTGGAGCCCCAAGAAATCAATTCAAGATGAAAGTGGTagaaaatttgccatcatgtgctcacgttctcacAAACgtaaaatttagtcatttcatgttgttgttttgcagaggacggtaaagaaatgtaccaatatgtaaaacgcacatgcagagccattgtttttgctcataaaacctattgttttgtgacgttctcgttgacattcctgtcctcgtttcttaaagtCCCTACTAACACTATCCATGTCATTGGAGCCCCAAGAAATCAATTCAAGATGAAAGTGGTAGGGCTGTGGCCCTACCAACCCTCCCCCTCCGCGGTCCCTGCCGTTGGCCACATTAACAAggtttagagcggttttcaaatGGGTGTTGAAattaattctcgttttgctttggttttgcattacttcgctctgtgattggcaaGGAAAACTCAtggcactttctcaaccaatgagaactagcaaaaccaaaaccaatcgcgacttgcacgcgcataTTTTCTCACACTTGGCGCTGGCTACTTGTAATTTATTGCTTcgtgttctgattggctcattgcattgcttacttctgttatgattggctggagtaattgctttggttttggttttggttttggttttacgacactcaattgaaaagcccTCTATGTGAGAAAAATGTAGGGCCATTTCTCCAGGATGGAAAAAAGTGGGCATAATAATGAAGTGGCCTTATGGTTGGGTTCCACTGTAGTGCAATAAGGAGCCAGTTAATAGGTTAGCACTTGCTGACTTGATGTATGATTTGTATTTAGATTTAGGTGGTAATGTTCCATGCATCTGGaagaaaacttaatttttaaGTAAATGAATTTGCacttagaaagaaaaattttccaTTACAGGCAGCACTCCCACTACAAACAAAATTTGCCAGGAGTATTTTGCAGGCATATGACTGATTTTGGTGTCTGAAGATTGTcaaacaaatagaaaaaaattgtttggtgGCTGAGACACTTCTTATTTTTTTGTAGATGTAAATGTAATGAATTTTCAGCAAAATGCCTCTGCAACAAAttggcatttttattttgtCATCAATCAGATCTTCTGGCTCATTTTCTTGACTCCATTGTTCAAACCTTTTCAACTTGTAACGTCCaagttttttttgtatttttgtgtgtatttatgtTGGAATTAATTTTACATCAAATGTatacaaaatattgaaatttctCCTCAGTTCAGTAAAATTTAGACAGTGCCTATGTTtggtagcctgcgtcgcagacgtaacagaacccctgcgacgcaggctaatgTTTGGCCAAATGCAATTTGCATAATTACAattcttaattaattaaaaagctATTTCTCACATAATTTTATtgcatataattattttactgaAATTTATCTTAAAATAGCTAGGCTTCAGCCACTCCTTTGACCTTTGACCATGTTAGATTCATTTTCTTGTAAATCATTATTTAAactgttaaaatttgttttataaataaaatcatgttcaattt

Protein

Uniprot

Uniprot term	Description
O18334	Ras-related protein Rab6 OS=Drosophila melanogaster OX=7227 GN=Rab6 PE=1 SV=1
Q1KME6	Ras-related protein Rab-6A OS=Gallus gallus OX=9031 GN=RAB6A PE=2 SV=3
P20340	Ras-related protein Rab-6A OS=Homo sapiens OX=9606 GN=RAB6A PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806	Family	Small GTPase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07893	RAB6A; Ras-related protein Rab-6A	-	GTP-binding proteins	ko04031	deepkoala