Gene detail

Detailed information of pspe_0.1.m1.60294.m1 in Pachyseris speciosa

Genomic Location: Sc0001006:267137...270131
NR annotation: CAH3141261.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.60294.m1

ATGTGTCAGGGATACGAGCTTATCAGTGACTACTCTAATGCTATAAAATGCCTCAAAAAGGGACTGCTCTTACTCCATGAGAGTGGCAGATTGTCCGAACAAGGACAATGGGACTTCAAACTGGCGCAGTTGtatcaaaagcaaagtaactacGAACAAGCAAAAGAACATTACATGAATGCACTCAACATCGCAACAGAGACTCGCGACAAGGAAAAAGAAGGAGTATATTGCGGGAACTTAGGAACTaGTGGTGAGGCAGCAGATTACGCAAACCTAGGAGCTGTCTTTAACTCTCTCGGGGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatccAAATTAAAATTGGAGACAAGAGTGGAGAGGCATCAGTTTACGGCAACCTAGGGAATGTCTTTCAATCTCTCGGAGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaaCTGGAGACAAGAGTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCATTATCTCGGAGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGGTGAGgcagcagattacggaaacctaggAATGTCTTTAACTCTGTCGGGGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAAACTAGGGACTGTCTTTCAATCTCTCGGAGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCAATCTCTCGGAGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCAATCTCTCGGAGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagaaaAGAGTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCATGATCTCGGAGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTgctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCAATCTCTCGGGGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGGAGGCAGCAGATTACGCAACCTAGGAACTGTCTTTAACTCTGTCGGGGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCCATCTCTCGGAGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCAATCTCTCGGAGAATAtcacaaggctgaagaatatcttcaaaaagcactaaaaatacgaattgaaattggagacaagagTGGTGAGTCAGCAGATTACGCAAACCTAGGAACTGTCTTTAAATCTCTCGGGGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagaaAGATCTCTCGGGGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagTGGAGAGGCATCAGTTTACGGCAGCCTAGGGACTGTCTTTCAATATCTCGGAGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatccgaattgaaattggagacaagagTGGTGAGGCAACAGATTACGGCAACCTAGGGACTGTCTTTCAATCTCTCGGAGAATAtcacaaggctgaagaatattttcaaaaatcacttaaaatccgaattgaaattggagaaaAGAGTGGAGAGGCATCAGTTTACGGCAACCTAGGGACTGTCTTTCAGTCTCTCGGAGAATAtcacaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGGAGAGGCAGTAGGTTACGGCAACCTAGGGACTGTCTTTCAGTCTCTCGGGGAATAtcaaaaggctgaagaatatcttcaaaaatcacttaaaatcctaattgaaattggagacaagagTGAGAGGCATCAGTTTACGGCAACCTAG

Transcript

pspe_0.1.m1.60294.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan