Gene detail

Detailed information of pspe_0.1.m1.60820.m1 in Pachyseris speciosa

Genomic Location: Sc0001029:205006...209218
NR annotation: PFX29454.1, hypothetical protein AWC38_SpisGene5754 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.60820.m1

ATGTCACTTGGAGTGGAAGTAACAGATCTGGGAAAGTATGTGTTTGTATTTTCAAGTTACTGGAATGTTGCTCTGGGAAAGTGCATTCCAGACTTGATCAGATTATTTGCTTGCTATAATGATGGTATAATAAATCTACTTGAAAAATACTTTGATATGAACAAGAAAAACTGCAAAGAGGGGCTGGACATATATAAAAAATTTATCACAAGAATGGACAGAGTGTCAGACTTCTTGAAAGTTGCAGAGGATGTAGGTTTTGATAAGGATGATATTCCAGATCTAAGCAAGTTCTCTACCATGTGCTGCGAAACAAAGATGGCGACGTCCGAACAAGTGAAAGAAATCGCACAAGCTGCAATAGACAGTATTAATCAGCTGTCCTCGTTAATTGCGCACGGACCATCAACGACAAGAATTCCTAGTAACGAACGTCAACCAACAACATCGGAGACGACTTTCGTTCGCCAAACCCAGCCAGCTAATAGCGCACTAACAGAATTGCAGAGGAGGTTTCCGACAGTTTCAAGAGGAAGATACAGAAGACCTTCTAATTCTAGCTCGCGGCCGTATCCAGTCGTTCAGAATGTAAGGCGTCCTGCTGGTCGACCGTTGGCATCTGAGATAGTTTCAAAGGATGTTATGATACTAGAAATGGGAAGAGAGAAAATACCGACGAAAGCAGAAAAGCTTGATTTAGAGAGAAGTGGACAAATTATATCAGGCGTTGACATTGATAGAAAATGGGATGCCAAAAAACTTCAGCAAGAGTTAGCGAAATTATTGACAGGTGAAATGGAGGGCTTGTATTTCGAAATAGTAAAGAACTCTGGTGGTACTTTGCTAAGACCGAACATCCAGGCAGGAAAAGAGATTGATTCAAAGCTGCTGCTGAAATCGATTGCTCCATCTGGTTGGATCTATTTAAGACTCCTGGAGGAACTGCCATCCATGATTGATCCCAGTGATAATCAACTAGAAGTTCCTGTGTTTGAAGTCCCTGAATCTGACATGCTTTCAAGTGATGCTAGTGGTAGAGACGACTTGTTTTGTAATATCATGGATTTGACAAAAGATTCTGATGCGAGTGTCCAATTGTCTCGACATATGTCAGACACCAATGCTGATGCCTCTAATACAAATGCAGGATCAGTGTTCAGTACAAGTAAGAGTCAGCCACCCTCGAGTTCATTTGATATCCAGTCAGTAATCAAAGGTGGTAAAGATCAGGGTTTGACTGACCCTGTAGAAGTGCTTAAATTTCTGCAAAAAGAGATTGTAACTGGCCGAGCCTTAGAAGTTACAAGCTGCGAAGAAACCATCGCGGgagaaacaaattacattacTGTTGACAGGGCAAATATATTAGAAACAACAATTAGTGAACTAGAATACACTACAAATTATAGACCGACATTTCAGGTGGACTTCATGGGAGAAGAATGTGTTGATCACGGTGGGCCATGTAAGGAATGGATAAGACTAATGAATCAAGCCATTAAAGAAAAGTACTTTGACCATGGCTTGAGGCCATTATTAGCACAAAATTACTACTTTGTTGGAGTGATGATGGCAgttgccatgcttcaaaacggGCAATTGCCTGTATTTGTAGAGGAGAGCACTCTGCAGCAAATTGTTTCTTTAGGAGAGTGTTTTGACCCTTGTGCCAATGTTGGTTCATCTCCTGAGACCCCAAGCACGGGCAAGTTGAGTGTACAAATGTTACTTCACATTTTGAAGCCTAACTTTTCAGAGGAGGGTTCTAATAccctgaaaaaggaaaaagaagtttATCAACCCCTTGTCAAGTATGTTCGAGAAGTGGCAGCTTCTAGGAGGGTGTGTGGGCAGACTACCCTTGATTTGAGTCACATACTTCAGTTTGCAACTGGTACTGCAGAGGAGCCTGTCCTTGGTTTCAGCCTTGCACCATCACTGGAGTTTATACTACCCACAGAAATCGTGAAAGTTGCAAGTCAGGAAGGACTCAATGATGAGCAGAAGAAAGGAGAGAGTGATAAGCAGCAGGAAGAACAAAGGGAAGAGCAGCACCCACCTGTGGAGGGCGGCTTCCTCCCTTTAGCTCATACCTGTACCAACTTGCTCGAGCTTCCCAGGCCAACTGAGAAAGTTCCTCTGCCTCCTATGgatagattatttgctctctaTGACTTAGCATTCTCACAGTGTTAA

Transcript

pspe_0.1.m1.60820.m1

Protein

Uniprot

Uniprot term	Description
Q9VI75	Phosphatidylinositol-binding clathrin assembly protein LAP OS=Drosophila melanogaster OX=7227 GN=lap PE=1 SV=3
O55012	Phosphatidylinositol-binding clathrin assembly protein OS=Rattus norvegicus OX=10116 GN=Picalm PE=1 SV=1
Q13492	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens OX=9606 GN=PICALM PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07651	ANTH	ANTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014712	Homologous_superfamily	ANTH domain superfamily	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR000569	Domain	HECT domain	Interproscan
IPR045192	Family	Clathrin coat assembly protein AP180-like	Interproscan
IPR011417	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22951	CLATHRIN ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005545	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0030136	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0048268	Biological Process	clathrin coat assembly	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005905	Cellular Component	clathrin-coated pit	Interproscan
GO:0006900	Biological Process	vesicle budding from membrane	Interproscan
GO:0008021	Cellular Component	synaptic vesicle	Interproscan
GO:0016185	Biological Process	synaptic vesicle budding from presynaptic endocytic zone membrane	Interproscan
GO:0032050	Molecular Function	clathrin heavy chain binding	Interproscan
GO:0072583	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0098894	Cellular Component	extrinsic component of presynaptic endocytic zone membrane	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan