Gene detail

Detailed information of pspe_0.1.m1.62013.m1 in Pachyseris speciosa

Genomic Location: Sc0001094:135628...141695
NR annotation: CAB4017808.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.62013.m1

GAAACGATCCAAGCTTTAGAAGAGCATTTTGGGCGGCACGGAATCCCAGCAAAGCTCATAACAGACTGCGGTGTCCAGTATACAAGCAGGGGGTTCACAGACTTTGCTAAAAGCTATAACTTTGAACATGTCCTGGTGAGCCCCAAGCACCCCCAAGCAAACGGGGAAGCAGAAGCTGCAGTCAAAACAGTGAAGTCCCTGTGGAGGAAAAACGAGAACAAGAACAAAGCGCTTCTAGACTACAGAGCCACCCCCATCCCAGAGATTGGCTTGTCGCCATCTCAGCTCTGCATGGGCCGCAGGCTAAGGACCACCTTACCAATGGCAACTGGTCTACTGAAACCTGAGACATACAACGCCCAAGAAATAAAGAGAAGCTTTCAGAAAGTTAAGGACAAGCAGAAGTACCATTATGACCGCCACGGTACCAGAGAATTGCCTCCACTCAAACAAGGTGATCATGTGAGAGTGAAACCGGAACATGGATCAAAGGAGTGGAAAGCAGCAACCGTAGTACAAGGCCATGCTTCTCCACGTTCGTATGTGGTAGATAGAGGCAGCCGTAGAATCCGACGTAACAGGGTGGCCTTGAGAGCCGATCGTCCAGAATCACATGCAGGTTATCAGCGGCGCCATGTAAGCACACTCCAGCAGCCAGAACCAGAACAGGAATCAGGCACCCCGGACACTGATACAGCGTCACAGCCCCCTTCTGGGGAAACGCCGATGAAAAATCCAGTACAAGTTTTTGGGGATGGTCAAGAACCTACAATCACTGAACGGAGCACAAGGAAAGGTCCAGCAGCTGTCCCCGAGAGATCTGAAGTCAGAGGTCCAGCCCCATGTTCTTGTGAACTGTcaaatattgaaagaaaacaaataataagAAAACATAAATCTGCTTCTGAAATTACATCAACTGGAAAaagaaggagagaaaaatacagcTTAATGGACACACAGGAGAAACAAGAACTTCTCTTAAATTATGCTGAAAACTATAGGTCAATGGACCGAGAACAAAAAAGTAAGTTTCtttatgaaagaaaacaaaagtatAATGACATGGAGCCAGAATCAAAAAAGCAGAAAATTGACAGGCTCAAAGAACAGCAGAAAGAAGCAAGGAAAGTTAAGGCCAACCAGACATACACCTTGGACCATTATATTACAATATTTAAGCAGAAAATAAGAGAAGGTCCATACTACATATGTTCAGTCTGCAATAGGACAGTCAGTTTTAATATTGCTAAAGAGCAAGTATATTACagtcaacaattttttacagATACAAAGTCCTTTGATGGCAAAGAATATATTTGTAAAACCTGTCATTCCAAAGTTTCAAAGGGAAACCTCCCATGTCAAGCTGTTTATAATAATCTGTATGTAGATAAAATCCCTGAAGAACTCTCTTCACTCAAAAAACTTGAGCAAATTCTGATAGCACAGagaaaagtttttcaaaagattgtaATCATGCCAAAAGGCCAGCAAAGGAAGATGAAAGGTGCAATTTGCAATGTCCCCGTTGAATGTGAAGAGACCTGTAGACTTTTGCCACGTCCATCTTCAAGTTCTGGAATAATTTTGTTGAAGCTGAAAAGAAAACTAGAATTTAGAGGTCATGTCTACTTTCAAGCTGTACGTCCACAGTTGTTATTGAATGCATTAAACTGGCTTAAGAATAACAATCCATTGTATAAGAACATAACTATTCACCTAGGAAACATTGACACAGCCATGACACTATTACAGCCACATGAAGACAATTCAGTTTCAAATGTGAATGATAAAGATGTCACAGACATTGAATCAAGCAGTAATGTTTTGGATGATAAAGCTGATGAGGAGATCGAGGACCCATTAAATGAGCATAGGTTACCAATCAGtgaaacatgtttacagtcCTTAATTCCAGATTATCCTTTGattgaagaaagaaatgaaagccTTTTGTCTGTAGGAAATGAAATTTATAACATAGCACCTGGAGAAAATAAGCACCCTGTATCATTAATGACTGATGAACAGTGTGAAGAACTAGCATTTCTAACCTTATTTCCAATGGGAAGATTTGGTTTTACAGCccaaagagataaaaaatggACTCCAGTAAAGTACTTCAATGCACGACTTTTGCATTACAGTGGGAGATTTGCAACAAACCCAGAGTACTTGTTCTTTGCACAGTTTATAATTGAACAAAAGAAGGTCTCTGATAATATCAGTATTGCCATGAAAAAAGTTATTGGGCAGCAAATGACAGCTTCTTCAATCAGAACAGATAAACAAAAGTTGACAAATCTTATTTTCAAAGACCAAGCATATTTATTCATGAGGCAGATTCTAGGCTCTCCACCATACTGGTAA

Transcript

pspe_0.1.m1.62013.m1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20209	DUF6570	Domain of unknown function (DUF6570)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR046700	Domain	Domain of unknown function DUF6570	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan