Gene detail

Detailed information of pspe_0.1.m1.64055.m1 in Pachyseris speciosa

Genomic Location: Sc0001227:32501...59171
NR annotation: CAH3141606.1, unnamed protein product [Porites lobata]
Species Pachyseris speciosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

pspe_0.1.m1.64055.m1

ATGCCATATCTAGTATCACTTGACGTGTCCCATAATCAACTCACAACTGTTTTAGACTTCAAGCCTCCTCTTGGACTAAGGGAAGTAAACTTGTCCCACAACAGAATAGAAGATCTCCCTGATCTCTCAGCTCATCACTGCCTCACATTTTTAATGTTAGATTATAATGACATTTCAGAAATTCAGGGTTTATCCAGCTGTCACCGTCTGTCTCACCTCAGCTTGGAAAGCAACAAGATTACAAGGATAGCAAATCTGGATAACCTGCCACTGAAGGCCCTGAACCTGAGTCACAACAACAtcaagaaaattgaaaatttggaAACCCTAAAGAGCCTTCAGGTTATCAATTTGTCAAAGAACAGCATTCGGAGCATGAAAGGTCTTCAAAACCACAATTTACTGCAAGAAATTGATCTGGAGGACAACCAGATAATCGATATCGCAGAGGTGAGGTACATCAGAGAACTGAATTTACTACGGATCCTTAACTTACTTGGGAACCCTATACAGGGCATGCCGGACTACAGACTGTCCTTATTGTTCAGAATACAAGGTCTGACGGAATTAGACCGCTCTAAAGTATCAGTTGACGAAAAGGTTGCAGCTGTGAACATGTTCAACCCACCAGCTGAGGTTATCGCAGCACGTGATCACATGTTTCACGTGACCAAGTCGCTTCTCCAACCTACAAGAATTCATGATAGTACTCTTCCAAGTGTGGACACGCCATATCCCATGTTAATACTGTGTGGACCCCCCGGATCAGGCAAACGATATCTTGCGCGGAGACTCTGTCAGGAGTTCCCAGACTTCTTCGGCTTTGGtatCTGCCACACCACAAGAGCACCTCATAAGAAGGAGGAAAACCTTGAAGATTATTGTTTCGTAACTCAAGAAGAGTTTGAACAAGGAGTTGTTATGGGTAAATTCTTACAAACGTGCCAGCTAGCGGGGAACTGGTACGGGGTCACGAGAGAGGCCGTAGAAAATGTGGCGCGCGAAGGTCTCGCGGCAGTATTCCACATGGACTTGGAGGGTGTCTTGAGCTTCAAGAACACTTACTTTGAGCCCAGATATGTTATGATTGTGCCAGTATCGAAGGAGATTCACGAAGCTCGTCTCCGTGAGCGAGGTGATTATGCAGAACCTCTTTTACTGCAGTCGTTGGACCGAGCTGATGTGTGCCTTGAATACAACAGAAAAAACCCTGGCTTCTTTGACATGGCAATCAACAGCGAGGATCTAAGTGAGGCTTACAAGCGGCTTAAACGCCTTATTATGGAATACCTGGGAATGTCACCGCCATCCACAATGCAATCCGAACTTTTCAGCGAGAGCATGATTTCTGTTGATACCAGCCAATCAGAGGAGACGTTTCAACAGGGCGCTAAATCAGGTACCAGTCAAACAACAAGTATCACGGTCAACATGGCTGCGAGAACCTGGTCACGACGTTCTGACTCATCCACCATACCCCCAAAGGGACTCAAATTGACCCAGCAGAAGACACCAGTGGAAATTCTATCGTTAGAGCGACGGCAGACCAAAGCTAAAGCCGCTGTGGCAGGAATTCACCAGATTCCACTGGAACAGTTTACCAGGCAAGCAGTTTCAGCTAGTTTCCAGCCCTCTACATCCAATTTCTCCCTGGACATCAAGCGTTCATCATCAGTCCCTCTCAAATTTAACGCCTCGCTGGCGTCAATGGTCGCAAATGCCAGCAGCCAGAACGAGGCAAGAGACGTAGGCCTGGAATCTAACATCTCTGAATCTGATGAGGACGAAGAAGGTACCTCGTCCATCGTGTCATCTGCGCGTGCGTATTCCGACAATGGTGCCCAGTCTCCGAGAGACTCGGATGGAGAAGAGGAGGAGGTATCGAGAGACCTGCTTGATTTTATCCCTACAGAGACGCTTGATTCGCAAGAAACCGGCTCCGTTCCTTTTTCGGGTGTTTTTGGCCAAGTGGAAATTGCAAATTCTATTTGA

Transcript

pspe_0.1.m1.64055.m1

ACACCCTTTCCTGTCAGATTTAACTCCTCTGGGTAGCATGCCATATCTAGTATCACTTGACGTGTCCCATAATCAACTCACAACTGTTTTAGACTTCAAGCCTCCTCTTGGACTAAGGGAAGTAAACTTGTCCCACAACAGAATAGAAGATCTCCCTGATCTCTCAGCTCATCACTGCCTCACATTTTTAATGTTAGATTATAATGACATTTCAGAAATTCAGGGTTTATCCAGCTGTCACCGTCTGTCTCACCTCAGCTTGGAAAGCAACAAGATTACAAGGATAGCAAATCTGGATAACCTGCCACTGAAGGCCCTGAACCTGAGTCACAACAACAtcaagaaaattgaaaatttggaAACCCTAAAGAGCCTTCAGGTTATCAATTTGTCAAAGAACAGCATTCGGAGCATGAAAGGTCTTCAAAACCACAATTTACTGCAAGAAATTGATCTGGAGGACAACCAGATAATCGATATCGCAGAGGTGAGGTACATCAGAGAACTGAATTTACTACGGATCCTTAACTTACTTGGGAACCCTATACAGGGCATGCCGGACTACAGACTGTCCTTATTGTTCAGAATACAAGGTCTGACGGAATTAGACCGCTCTAAAGTATCAGTTGACGAAAAGGTTGCAGCTGTGAACATGTTCAACCCACCAGCTGAGGTTATCGCAGCACGTGATCACATGTTTCACGTGACCAAGTCGCTTCTCCAACCTACAAGAATTCATGATAGTACTCTTCCAAGTGTGGACACGCCATATCCCATGTTAATACTGTGTGGACCCCCCGGATCAGGCAAACGATATCTTGCGCGGAGACTCTGTCAGGAGTTCCCAGACTTCTTCGGCTTTGGtatCTGCCACACCACAAGAGCACCTCATAAGAAGGAGGAAAACCTTGAAGATTATTGTTTCGTAACTCAAGAAGAGTTTGAACAAGGAGTTGTTATGGGTAAATTCTTACAAACGTGCCAGCTAGCGGGGAACTGGTACGGGGTCACGAGAGAGGCCGTAGAAAATGTGGCGCGCGAAGGTCTCGCGGCAGTATTCCACATGGACTTGGAGGGTGTCTTGAGCTTCAAGAACACTTACTTTGAGCCCAGATATGTTATGATTGTGCCAGTATCGAAGGAGATTCACGAAGCTCGTCTCCGTGAGCGAGGTGATTATGCAGAACCTCTTTTACTGCAGTCGTTGGACCGAGCTGATGTGTGCCTTGAATACAACAGAAAAAACCCTGGCTTCTTTGACATGGCAATCAACAGCGAGGATCTAAGTGAGGCTTACAAGCGGCTTAAACGCCTTATTATGGAATACCTGGGAATGTCACCGCCATCCACAATGCAATCCGAACTTTTCAGCGAGAGCATGATTTCTGTTGATACCAGCCAATCAGAGGAGACGTTTCAACAGGGCGCTAAATCAGGTACCAGTCAAACAACAAGTATCACGGTCAACATGGCTGCGAGAACCTGGTCACGACGTTCTGACTCATCCACCATACCCCCAAAGGGACTCAAATTGACCCAGCAGAAGACACCAGTGGAAATTCTATCGTTAGAGCGACGGCAGACCAAAGCTAAAGCCGCTGTGGCAGGAATTCACCAGATTCCACTGGAACAGTTTACCAGGCAAGCAGTTTCAGCTAGTTTCCAGCCCTCTACATCCAATTTCTCCCTGGACATCAAGCGTTCATCATCAGTCCCTCTCAAATTTAACGCCTCGCTGGCGTCAATGGTCGCAAATGCCAGCAGCCAGAACGAGGCAAGAGACGTAGGCCTGGAATCTAACATCTCTGAATCTGATGAGGACGAAGAAGGTACCTCGTCCATCGTGTCATCTGCGCGTGCGTATTCCGACAATGGTGCCCAGTCTCCGAGAGACTCGGATGGAGAAGAGGAGGAGGTATCGAGAGACCTGCTTGATTTTATCCCTACAGAGACGCTTGATTCGCAAGAAACCGGCTCCGTTCCTTTTTCGGGTGTTTTTGGCCAAGTGGAAATTGCAAATTCTATTTGAACTGTTGCTTCTTTATGCTGCTAGAAGTGTTACAAATCTCCTTATTTTCGTTTCCCTTTAGGGTTGCGTTCATGTGACTGCGGCAAAATTAATAGTTTTCGGTGTCACAAAGGATAGGGTTTTCATGACTGCGGCCTGACAGAGGAGAAAAGGAAGTATTTTACTGGAAGTGGAAAAACAGATTTGTGGTTTTCCTATTGTTTGTATATAAGTATTTTTATTTGGATGTAAATAATtattgaaaacaaagaaaccaacaTACAGATTATTCCGAAATGAGTACAATCCCTCCTTCATTCGGTTAGACTTGTGCTGTAGTCTTTGTTAATCAAACTATGTTACCAAATGATAGCATTAAACTAATTTGTTTGCGTGTTGTGTATGATAAAATAACGGAAACTGACACCTTTTTCCTACCTTGTTTCTGAAAgcccaac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96M69	Leucine-rich repeat and guanylate kinase domain-containing protein OS=Homo sapiens OX=9606 GN=LRGUK PE=1 SV=1
Q9D5S7	Leucine-rich repeat and guanylate kinase domain-containing protein OS=Mus musculus OX=10090 GN=Lrguk PE=1 SV=1
Q0TBG1	Guanylate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=gmk PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006253 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14580 all species →	LRR_9	Leucine-rich repeat	Repeat	Interproscan
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23117 all species →	GUANYLATE KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004385 all species →	Molecular Function	guanylate kinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25549	LRGUK; leucine-rich repeat and guanylate kinase domain-containing protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.