Gene detail

Detailed information of pspe_0.1.m1.64082.m1 in Pachyseris speciosa

Genomic Location: Sc0001229:83890...102743
NR annotation: CAH3169412.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

pspe_0.1.m1.64082.m1

atgcaaaacgGAAGAGTGACTGTTCATCAGCTGGCAAAAGAGCACCCTCTGGACTCAAACGGCCATCCTATCGGCGGAAACAGACCTAGCGATGTTGAGCTGATATGTAAAAATGATGACAGTGTAGATGTGGGAAGGCCCTGGCACATTTCTTCACCAGTACAAGTTAGTGAGTTCAGAGAGCAGTGGCCACAAGCCCAAGTGTCACACACGCAGGTACCACAACCTCACATGCTACAGCCTCGGGTCGCTCAAACCCAGATAGCACCAGCCCAAGTACCACAGTCCCACATACCACATCCCCAAGTGCCACCACCAAGTCAGCTGCTGTATCAACAGCCTCCAGAAAATAACAGACTTGGGAATCAAAGATCAACCATACCTGATCCTGCACATATTACTCAACCACCAAACCATCAAGTTGAACCAGATGTTGAATCATCAAGCTCCTCTGATAATGAAGCAGACTCTGCACAGCAGACATCTAGTTCATCAAGTCCAGATTCAGTTGATCACAATCAAGAAAGACCCACATCGTTATTGAACTACAATTATCAACCCAAGCAGGAACCAGAACCTGAACCTGAACCTGTTGCAGAggttgtcaaagaaaatgtgtCTAGAACAGCTGTGGGGGAAGGTCAGGTTGAAGAAGCAGAGACATCCACCCCGGTGGAGGTAAAAACTGAGGTGGCTTCTCCACCAGAGGATGAGCCTGGGATAGCTTCTGTTCTGGAGAGAGAGCATGACATAGTCACTCCTATGGAGAAGGAGGGTGTGAAAAACATGTCTCTAGATAGCACAACTACAGTAGAAGAAGTCAAACAACCAattgaagaaaatgaagaaggcGAAATTGAGGAAGAGAAGGAGACAGAAAAGACAGTTCCAGAGGAAAAGGAAAGAGAAGTTGATAATGAGAAGGAGAATGAGCCTCCTGAAGAAAAGTCAAGTATTGTAGAGATACCACAGCAACAGCTGTCTCCAGCTGAAGAAAATACTTTTGAAGTGGAGCCAAGTGAGGAGGATAAGGCAGTTGTAGAGGAGCCAAAAGTTCCATCCTCACAGAAATCAGCTTCACCTTTTGTCACCAAGAAGAGAAAAATATCCATTCCAAGAACTTCATTGTCAAGCACACCAACTTCTGAGGGACAGCCAGCTTCACGGAAGAGGAGATGGGGATCTTCATCGTCAACCAAGAAAAAAACTACCTTGTCCATTAGTACAGACTCCCTCAAGGATCTCATTCCAGGAGTTCAAGTGCACAGTACACCAGCATTGGAAGCAGTCATGGATCTTGGaggtgatgacaatgatgaggaagaagaggaTGAAGAAAAGCCACCAGAAAGGAAGGTAGAGCCCGAAGAGAAGGAACCGGTGCCTGTACAGACACCAGATGCTAAGGAGCCAGAGGGTAAGAGACGGAAAGAGAGGATTGTTAAGGTAGAGGAGAAGAAAACCATCAAGCTACAGAGAAAGCCTGTTATTGTTGAAAAGGAACACGAACATGAACATGTTAAAATGGAGGTTGAGGAAGCAGAGAACTCACGGTCACCCACAAGGTATCCAGAGAGTGAAGCGCTTCATGTGAAGAACCTTGTGCGGCCATTCACTGTGAACCAGCTCAAGGATCTTCTGAGCAAGCATGGAAACCTGACTGAAGATGGATTTTGGATGGACAAGATAAAGTCCCACTGTTATGCTGTGTACACCAGTGTTGAAGAAGCTGCTGCTAGTAGACAGGCCCTCCATGGCATCAACTGGCCACTAACAAGTCCAAAGATCCTTGCTGTTGATTTTGCCGATGAAGAGGAGGTTGGTGTGAATGAGTTTATGTACACGTGTTCGTGTGAAGTTGATATGATGGTCAGAGATACCGAGGGACTTTTAGGTAAAAAGAAGGAAAGGGAAAGGGATGTTAAAACTGAGAAAGTTGTGACGAAGGAGAAGACAGTGGAAACTTCTCGAGCGAAGGCTGCTGAGCAGGAAGAAGAAGATGATCAGAAGAATGCTGGTAACCTGCTGGATAATTTGTTCCGAAAAACCAAGACTACGCCTTGTCTGTACTGGCTGCCTCTCAGTGATGAACAGATTGCAGAAAGGCATCGGGAACGTGAAGAAAGACGCAAAGCTCGGCAAGAAGAACGAAAGAAGGAAGAAGAGGAGCAAAAGGAAAGACTGGAACGGCAACAGCAGCGAGAAAAAGAACGAGAAAAGGAGAAGAAAGAGCGTGAAACAGATAAACAGCGCTCACGCTCACCACGAAACAACAGACGACGAGAGCGAAGTAGAAGCAGAAGCCGCAGCCCGAGAGGACCGAGACGGCGGTGA

Transcript

pspe_0.1.m1.64082.m1

Protein

Uniprot

Uniprot term	Description
Q9JIX8	Apoptotic chromatin condensation inducer in the nucleus OS=Mus musculus OX=10090 GN=Acin1 PE=1 SV=3
Q9UKV3	Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens OX=9606 GN=ACIN1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16294	RSB_motif	RNSP1-SAP18 binding (RSB) motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032552	Conserved_site	Acin1, RNSP1-SAP18 binding (RSB) motif	Interproscan
IPR052793	Family	Exon junction complex-associated protein	Interproscan
IPR034257	Domain	Acinus, RNA recognition motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46589	APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008380	Biological Process	RNA splicing	Interproscan
GO:0061574	Cellular Component	ASAP complex	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12875	ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus	-	Spliceosome	ko03041	deepkoala