Gene detail

Detailed information of pspe_0.1.m1.6417.m1 in Pachyseris speciosa

Genomic Location: Sc0000009:2024940...2028140
NR annotation: KAJ7382837.1, hypothetical protein OS493_032473 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

pspe_0.1.m1.6417.m1

AGTAGACATACGATGCATGTTGAACGCGCGAGGGGTAAACTTAAATAATGTCTCCACGCGAGTGACGCTGACAACTACGCGTGTCCATATctgcaaaacatttttattatgTCAAGAAATACTAAATTAAAAGGTTTCGTGTTTCTCTCGGCGTGCGTTTTGGACGCCaaaaagtgtgaaaaaggtAATTACCGAGAATGCCTGAGCAACACCTCGATCATACTAAAGCGGAAATTAAGATCTTCAATTACAGTTAATAATAAGCCATGGGTAGATTCAATCTACCCTTAgcttaatttgcataattttttgGGGGGGGCAAAGCTCGTCATGAAACTTCGTTTCAATCAGTCCCTGAGAGGCCTCTTACACGAGGGGAATCTATATCGAGTTTGAAGGTTTCATCGAGCTTTTTACCTCACTATCAGTTATGAAGCTAAATAATTTATGTAGCCTAGAAATGAAATTGCAGTCGAGGTTAATTATTAATTTAACTGGCAATCACGGAGAATGTAGTTCTATCAATTGTCCTCGCCTCTACGTTCTTCCTAGATAGTTTTGAGGTCTTTATGAGATGTCGCAAGCTTCACTAAATACTGCATCGATAATTCCCTTTATGAAACAAACTAAAGATAAACATACTCATTAGCTTAGATCAAGTGATAACCcactttgtttaattttctcaTTTCCTCGACAAAGAACAAGCTAGAATGTTAAACTTTCTTTGTTCACCTGCCTGAGAGGGTAAGGTCCTACATACACCCTATGCAAAAATCGttacctttaaattattctattctaacctcgttcgggataacaaattctttagaattttgatctcaaaagcgaggttagtgaggctattttgaataagagCGAAAGAATAacttaaaggcagccattttcgCGTAGGGTCTTTAAAATGGATTGAAGCGAAGTTTTTATTCCAGGAAAACCAATGATCCAAGAGATGCTTTACAATCCCAATCCAAAGATGACAGTTGATGCATACGATAACGCCATTATTTATTGTCACGTCATTGGTTACCCTGAACCCAAAGTAAAGTGGTTGATGAAGGCCGACTTCCCGGATGATCGAACGGAAATCGGGAACGACAGTCTCGTTATCAGGAGGATACAAGTCCAAGACTCGGGTGCTTACATTTGCAAAGCTCAGAATTCTTATGGTGAGGTGGAGATGAAAGTCAGTGTGACTGTGAGACCAAGAAGTGGTCGTGGCCGTGACGATGCCGCACGAAATTGCAAAGAATTGAAGACCCAAATTCCAAGCGCTCCATCGGGGAAATACTGGCTTGACCCAGACCTCGGGTCCTCTGACAACGCCTTCTTGAGTTACTGCGACCAGGAAACGGACGGTGGAGGCTGGACACTAGTATGGAGTTATCACGTTGTAACGGGAAAAGCAAGCTGGAAGGAGGAAGATTTTTTTACACCCAGGCCATCCTTTCCCGTCCCATTACGGCTAGGAGGCTATGTGTACATGTCTCAGCTGTCCACAACTCCCCCTTCGGACCCCTCCCTTCCTGCAGCAATGAACTTCAGTCTTTGGAAGACGCTTGGGACCGAGATGCTTCTGCAGTCAAACCTGATAAACTGGTATATCTGTCGGGATGGCTCCGGAAGCATACTGAAATGGACCGAAGGCAGCATTTCCTGTCAGGTGACAAAAACCTTGGTGGACGGTTGCAACAATACTGCTCCGAACCACTTCGCAAAGGAAGAATATTATGGTATGGGACTCAACGAAGGGAGTGGCTACAGGAATACTTATACCATCTACAAGGTAGCAGTGATGGCGTGGAGTGCCAGAACTGGTGGTTATGAAGTTGATGCCTGCGGTAAGGAAGCTGGAAAAAAGTTCAAGGAAGATGTGGATAATCCGAGAGGAGCCTGGTTCGTGCGTTAACTTCCAGAATTCAATGTGTGGTATGCAGTGTGACGATGATTTTTTGCTTGCTTTAGAAGGCTGAAATTAAAACTACTTGTAGAGTAGGGGGGATACTAAGCTTGCTACACCAGAAGGGAAATATTGAAATTAAGACAAACGGAAGCAAACTGTAACAAAATACTATCACTATCATCCAAGTAATAAAACCGTAAAAAAAGATTAgctcctcttttttttttaagacgcAACCATTTCCTTCCTGACCATTTAAGTCAAGTGTTAGCttggtttcaaaaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan