Gene detail

Detailed information of pspe_0.1.m1.64514.m1 in Pachyseris speciosa

Genomic Location: Sc0001261:17087...46205
NR annotation: PFX18406.1, RNA-directed DNA polymerase from mobile element jockey [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q0P031	Visual system homeobox 1 OS=Xenopus laevis OX=8355 GN=vsx1 PE=2 SV=1
Q8N693	Homeobox protein ESX1 OS=Homo sapiens OX=9606 GN=ESX1 PE=1 SV=3
P53544	Homeobox protein goosecoid OS=Danio rerio OX=7955 GN=gsc PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR051306	Family	Homeobox domain-containing regulator	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46123	MIX-TYPE HOMEOBOX GENE 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan